YRC Public Data Repository - Protein Structure Prediction

Protein:	NTF2_EMENI
Organism:	Emericella nidulans
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NTF2_EMENI.

Description	E-value	Query Range	Subject Range
gi\|119187145, gi... - gi\|90302965\|gb\|EAS32596.1\| hypothetical protein CIMG_03620 [Coccidioides immitis RS], gi\|119187145\|r... gi\|240108306 - gi\|240108306\|gb\|EER26480.1\| Nuclear transport factor 2 , putative [Coccidioides posadasii C735 delta...	152.0	[0..1]	[124..1]
gi\|115396234, gi... - gi\|115396234\|ref\|XP_001213756.1\| nuclear transport factor 2 [Aspergillus terreus NIH2624], gi\|114193...	151.0	[0..1]	[123..1]
gi\|125562321 - gi\|125562321\|gb\|EAZ07769.1\| hypothetical protein OsI_30022 [Oryza sativa Indica Group] NTF2_ORYSA - Nuclear transport factor 2 (NTF-2) - Oryza sativa (Rice) NTF2_ORYSJ - Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1	148.0	[0..3]	[123..2]
NTF2_CANGA - Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / ... NTF2_CANGA - Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1	148.0	[0..3]	[125..4]
NTF2_DAVTA - Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1	147.0	[0..1]	[125..1]
gi\|21555203 - gi\|21555203\|gb\|AAM63803.1\| nuclear transport factor 2, putative [Arabidopsis thaliana]	147.0	[0..3]	[123..2]
NTF2_KLULA - Nuclear transport factor 2 OS=Kluyveromyces lactis GN=NTF2 PE=3 SV=1 NTF2_KLULA - Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1...	146.0	[0..2]	[125..3]
gi\|115969780, gi... - gi\|115969780\|ref\|XP_001178070.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	146.0	[0..2]	[121..37]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFQSIAQQ FVTFYYQTFD GNRAGLAPLY RDHSMLTFET SAIQGVAGII EKLTSLPFQK  60
   61 VQHQVSTLDA QPSGEHGGIL VLVTGALLVD EEKNPMNYTQ TFQLMPDGAG SYFVLNDVFR 120
  121 LIYNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1gy7A
Description:	Nuclear transport factor-2 (NTF2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits