YRC Public Data Repository - Protein Structure Prediction

Protein:	NRFD_ECOLI
Organism:	Escherichia coli
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRFD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83855682, gi\|... - gi\|83855682\|ref\|ZP_00949211.1\| molybdopterin oxidoredutase membrane subunit [Croceibacter atlanticus...	203.0	[0..5]	[312..65]
gi\|86140757, gi\|... - gi\|86140757\|ref\|ZP_01059316.1\| molybdopterin oxidoredutase membrane subunit [Flavobacterium sp. MED2... gi\|86140757, gi\|... - gi\|86140757\|ref\|ZP_01059316.1\| molybdopterin oxidoredutase membrane subunit [Flavobacterium sp. MED2...	194.0	[0..5]	[312..67]
gi\|86131980, gi\|... - gi\|86131980\|ref\|ZP_01050576.1\| molybdopterin oxidoredutase membrane subunit [Cellulophaga sp. MED134...	194.0	[0..5]	[312..66]
gi\|88784801, gi\|... - gi\|88803922\|ref\|ZP_01119442.1\| molybdopterin oxidoredutase membrane subunit [Robiginitalea biformata...	190.0	[0..5]	[312..67]
gi\|88711060, gi\|... - gi\|88711060\|ref\|ZP_01105148.1\| molybdopterin oxidoredutase membrane subunit [Flavobacteriales bacter...	190.0	[0..5]	[312..67]
gi\|83814119, gi\|... - gi\|83814119\|ref\|YP_446211.1\| polysulfide reductase chain C [Salinibacter ruber DSM 13855], gi\|837555...	187.0	[0..5]	[312..42]
gi\|108460962, gi... - gi\|108757082\|ref\|YP_633695.1\| NrfD family oxidoreductase membrane subunit [Myxococcus xanthus DK 162...	184.0	[0..5]	[312..67]
gi\|91184842, gi\|... - gi\|91216971\|ref\|ZP_01253934.1\| molybdopterin oxidoredutase membrane subunit [Psychroflexus torquis A...	181.0	[0..5]	[312..66]
gi\|110599607, gi... - gi\|110599607\|ref\|ZP_01387843.1\| Polysulphide reductase, NrfD [Geobacter sp. FRC-32], gi\|110549654\|gb...	178.0	[0..5]	[312..59]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTSAFHFE SLVWDWPIAI YLFLIGISAG LVTLAVLLRR FYPQAGGADS TLLRTTLIVG  60
   61 PGAVILGLLI LVFHLTRPWT FWKLMFHYSF TSVMSMGVML FQLYMVVLVL WLAKIFEHDL 120
  121 LALQQRWLPK LGIVQKVLSL LTPVHRGLET LMLVLAVLLG AYTGFLLSAL KSYPFLNNPI 180
  181 LPVLFLFS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GISSGAAVAL IAMAIRQRSN PHSTEAQFVH RMEIPVVWGE IFLLVAFFVG LALGDDGKVR  60
   61 ALVAALGGGF WTWWFWLGVA GLGLIVPMLL KPWVNRSSGI PAVLAACGAS LVGVLMLRFF 120
  121 ILYAGQLTVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits