YRC Public Data Repository - Protein Structure Prediction

Protein:	NRDI_ECOLI
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRDI_ECOLI.

Description	E-value	Query Range	Subject Range
NRDI_ECO8A - Protein NrdI OS=Escherichia coli O8 (strain IAI1) GN=nrdI PE=3 SV=1 gi\|75234109, gi\|... - gi\|75234109\|ref\|ZP_00718520.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... NRDI_ECO24 - Protein NrdI OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nrdI PE=3 SV=1 NRDI_ECO55 - Protein NrdI OS=Escherichia coli (strain 55989 / EAEC) GN=nrdI PE=3 SV=1	141.0	[0..1]	[136..1]
NRDI_SHIDS - Protein NrdI OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nrdI PE=3 SV=1	141.0	[0..1]	[136..1]
NRDI_BRUA2 - Protein NrdI OS=Brucella abortus (strain 2308) GN=nrdI PE=3 SV=1 NRDI_BRUSI - Protein NrdI OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nrdI PE=3 SV=1 NRDI_BRUSU - Protein nrdI OS=Brucella suis GN=nrdI PE=3 SV=1 gi\|225616617, gi... - gi\|225628771\|ref\|ZP_03786805.1\| nrdI protein [Brucella ceti str. Cudo], gi\|225616617\|gb\|EEH13665.1\| ... NRDI_BRUO2 - Protein NrdI OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=nrdI PE=3 SV=1 NRDI_BRUMB - Protein NrdI OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=nrdI PE=3 SV=1 NRDI_BRUA1 - Protein NrdI OS=Brucella abortus (strain S19) GN=nrdI PE=3 SV=1 gi\|254695433 - gi\|254695433\|ref\|ZP_05157261.1\| ribonucleotide reductase stimulatory protein [Brucella abortus bv. 3... gi\|254699597 - gi\|254699597\|ref\|ZP_05161425.1\| ribonucleotide reductase stimulatory protein [Brucella suis bv. 5 st... gi\|237817305, gi... - gi\|237817305\|ref\|ZP_04596297.1\| nrdI protein [Brucella abortus str. 2308 A], gi\|237788118\|gb\|EEP6233... NRDI_BRUME - Protein nrdI OS=Brucella melitensis GN=nrdI PE=3 SV=1 gi\|254691265 - gi\|254691265\|ref\|ZP_05154519.1\| ribonucleotide reductase stimulatory protein [Brucella abortus bv. 6... NRDI_BRUME - Protein NrdI OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=nrdI PE=3 SV... gi\|254711555 - gi\|254711555\|ref\|ZP_05173366.1\| ribonucleotide reductase stimulatory protein [Brucella pinnipedialis... gi\|254712152 - gi\|254712152\|ref\|ZP_05173963.1\| ribonucleotide reductase stimulatory protein [Brucella ceti M644/93/... gi\|254702720 - gi\|254702720\|ref\|ZP_05164548.1\| ribonucleotide reductase stimulatory protein [Brucella suis bv. 3 st... NRDI_BRUSU - Protein NrdI OS=Brucella suis biovar 1 (strain 1330) GN=nrdI PE=3 SV=1 gi\|254706146 - gi\|254706146\|ref\|ZP_05167974.1\| ribonucleotide reductase stimulatory protein [Brucella pinnipedialis... NRDI_BRUAB - Protein NrdI OS=Brucella abortus biovar 1 (strain 9-941) GN=nrdI PE=3 SV=1 NRDI_BRUC2 - Protein NrdI OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=nrdI PE=3 SV=1 gi\|254732499 - gi\|254732499\|ref\|ZP_05191077.1\| ribonucleotide reductase stimulatory protein [Brucella abortus bv. 4... gi\|254715223 - gi\|254715223\|ref\|ZP_05177034.1\| ribonucleotide reductase stimulatory protein [Brucella ceti M13/05/1... gi\|254720034 - gi\|254720034\|ref\|ZP_05181845.1\| ribonucleotide reductase stimulatory protein [Brucella sp. 83/13] NRDI_BRUAB - Protein nrdI OS=Brucella abortus GN=nrdI PE=3 SV=1	141.0	[0..1]	[134..1]
NRDI_SHIBS - Protein NrdI OS=Shigella boydii serotype 4 (strain Sb227) GN=nrdI PE=3 SV=1	141.0	[0..1]	[136..1]
NRDI_ECOUT - Protein NrdI OS=Escherichia coli (strain UTI89 / UPEC) GN=nrdI PE=3 SV=1 NRDI_ECO45 - Protein NrdI OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nrdI PE=3 SV=1 gi\|226899744, gi... - gi\|237706704\|ref\|ZP_04537185.1\| adenine DNA glycosylase [Escherichia sp. 3_2_53FAA], gi\|226899744\|gb... NRDI_ECOK1 - Protein NrdI OS=Escherichia coli O1:K1 / APEC GN=nrdI PE=3 SV=1	140.0	[0..1]	[136..1]
NRDI_SALTY - Protein nrdI OS=Salmonella typhimurium GN=nrdI PE=3 SV=1 NRDI_SALCH - Protein nrdI OS=Salmonella choleraesuis GN=nrdI PE=3 SV=1 gi\|167992527, gi... - gi\|205329288\|gb\|EDZ16052.1\| NrdI protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205340786, gi... - gi\|205340786\|gb\|EDZ27550.1\| NrdI protein [Salmonella enterica subsp. enterica serovar Weltevreden st... NRDI_SALA4 - Protein NrdI OS=Salmonella agona (strain SL483) GN=nrdI PE=3 SV=1 NRDI_SALCH - Protein NrdI OS=Salmonella choleraesuis (strain SC-B67) GN=nrdI PE=3 SV=1 NRDI_SALPC - Protein NrdI OS=Salmonella paratyphi C (strain RKS4594) GN=nrdI PE=3 SV=1 NRDI_SALCH - Protein nrdI OS=Salmonella choleraesuis GN=nrdI PE=3 SV=1 gi\|205322694, gi... - gi\|205322694\|gb\|EDZ10533.1\| NrdI protein [Salmonella enterica subsp. enterica serovar Saintpaul str.... NRDI_SALTY - Protein nrdI OS=Salmonella typhimurium GN=nrdI PE=3 SV=1 NRDI_SALTY - Protein NrdI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nrdI PE=3 SV=1	135.0	[0..1]	[136..1]
gi\|77977848, gi\|... - gi\|77977848\|ref\|ZP_00833287.1\| COG1780: Protein involved in ribonucleotide reduction [Yersinia inter...	135.0	[0..1]	[133..1]
NRDI_RHIEC - Protein NrdI OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nrdI PE=3 SV=1	134.0	[0..1]	[133..1]
gi\|77961615 - gi\|77961615\|ref\|ZP_00825448.1\| COG1780: Protein involved in ribonucleotide reduction [Yersinia molla...	134.0	[0..1]	[133..8]
gi\|77973118 - gi\|77973118\|ref\|ZP_00828670.1\| COG1780: Protein involved in ribonucleotide reduction [Yersinia frede...	133.0	[0..1]	[133..8]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLVYFSSS SENTQRFIER LGLPAVRIPL NERERIQVDE PYILIVPSYG GGGTAGAVPR  60
   61 QVIRFLNDEH NRALLRGVIA SGNRNFGEAY GRAGDVIARK CGVPWLYRFE LMGTQSDIEN 120
  121 VRKGVTEFWQ RQPQNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1j9zA
Description:	NADPH-cytochrome p450 reductase; NADPH-cytochrome p450 reductase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.646071595570549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: