YRC Public Data Repository - Protein Structure Prediction

Protein:	NRDH_ECOLI
Organism:	Escherichia coli
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRDH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238794392, gi... - gi\|77977371\|ref\|ZP_00832821.1\| COG0695: Glutaredoxin and related proteins [Yersinia intermedia ATCC ...	111.0	[0..2]	[79..3]
gi\|77958476, gi\|... - gi\|77958476\|ref\|ZP_00822509.1\| COG0695: Glutaredoxin and related proteins [Yersinia bercovieri ATCC ...	110.0	[0..2]	[79..3]
gi\|229904474, gi... - gi\|229904474\|ref\|ZP_04519585.1\| glutaredoxin [Yersinia pestis Nepal516], gi\|229678592\|gb\|EEO74697.1\|... gi\|165936101, gi... - gi\|89103916\|ref\|ZP_01176476.1\| COG0695: Glutaredoxin and related proteins [Yersinia pestis biovar Or... gi\|108781380, gi... - gi\|108809467\|ref\|YP_653383.1\| glutaredoxin 3 [Yersinia pestis Antiqua], gi\|108781380\|gb\|ABG15438.1\| ... gi\|229706627, gi... - gi\|229836179\|ref\|ZP_04456347.1\| glutaredoxin [Yersinia pestis Pestoides A], gi\|229706627\|gb\|EEO92633... gi\|229839915, gi... - gi\|229839915\|ref\|ZP_04460074.1\| glutaredoxin [Yersinia pestis biovar Orientalis str. PEXU2], gi\|2296... gi\|229690307, gi... - gi\|229841997\|ref\|ZP_04462152.1\| glutaredoxin [Yersinia pestis biovar Orientalis str. India 195], gi\|... gi\|21956737, gi\|... - gi\|22123996\|ref\|NP_667419.1\| glutaredoxin 3 [Yersinia pestis KIM], gi\|21956737\|gb\|AAM83670.1\|AE01360... gi\|25282789 - pir\|\|AB0009 glutaredoxin [imported] - Yersinia pestis (strain CO92) gi\|51587702, gi\|... - gi\|51594420\|ref\|YP_068611.1\| glutaredoxin 3 [Yersinia pseudotuberculosis IP 32953], gi\|51587702\|emb\|... gi\|45439930, gi\|... - gi\|45439930\|ref\|NP_991469.1\| glutaredoxin 3 [Yersinia pestis biovar Microtus str. 91001], gi\|4543478... gi\|15978179, gi\|... - gi\|218927285\|ref\|YP_002345160.1\| glutaredoxin 3 [Yersinia pestis CO92], gi\|16120417\|ref\|NP_403730.1\|... gi\|149290280, gi... - gi\|150260872\|ref\|ZP_01917600.1\| glutaredoxin [Yersinia pestis CA88-4125], gi\|149290280\|gb\|EDM40357.1... gi\|145601079, gi... - gi\|145601079\|ref\|YP_001165155.1\| glutaredoxin 3 [Yersinia pestis Pestoides F], gi\|145212775\|gb\|ABP42... gi\|167418716, gi... - gi\|167418716\|ref\|ZP_02310469.1\| glutaredoxin 3 [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|167399402, gi... - gi\|167399402\|ref\|ZP_02304926.1\| glutaredoxin 3 [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1... gi\|167471019 - gi\|167471019\|ref\|ZP_02335723.1\| glutaredoxin 3 [Yersinia pestis FV-1] gi\|167426654, gi... - gi\|167426654\|ref\|ZP_02318407.1\| glutaredoxin 3 [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|186893408, gi... - gi\|186893408\|ref\|YP_001870520.1\| glutaredoxin 3 [Yersinia pseudotuberculosis PB1/+], gi\|186696434\|gb... gi\|170026346, gi... - gi\|170026346\|ref\|YP_001722851.1\| glutaredoxin 3 [Yersinia pseudotuberculosis YPIII], gi\|169752880\|gb... gi\|162418373, gi... - gi\|77634055\|ref\|ZP_00796164.1\| COG0695: Glutaredoxin and related proteins [Yersinia pestis Angola], ... Q66GC0\|Q66GC0_YERPS - Glutaredoxin - Yersinia pseudotuberculosis gi\|165926165, gi... - gi\|165926165\|ref\|ZP_02221997.1\| glutaredoxin 3 [Yersinia pestis biovar Orientalis str. F1991016], gi... gi\|153947711, gi... - gi\|77630857\|ref\|ZP_00793443.1\| COG0695: Glutaredoxin and related proteins [Yersinia pseudotuberculos... gi\|166213646, gi... - gi\|166213646\|ref\|ZP_02239681.1\| glutaredoxin 3 [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|166011460, gi... - gi\|166011460\|ref\|ZP_02232358.1\| glutaredoxin 3 [Yersinia pestis biovar Antiqua str. E1979001], gi\|16...	110.0	[0..2]	[79..3]
gi\|83372730, gi\|... - gi\|83372730\|ref\|ZP_00917510.1\| Glutaredoxin, GrxC [Rhodobacter sphaeroides ATCC 17029], gi\|83367052\|...	110.0	[0..1]	[79..240]
gi\|238717336, gi... - gi\|77961960\|ref\|ZP_00825787.1\| COG0695: Glutaredoxin and related proteins [Yersinia mollaretii ATCC ...	109.0	[0..2]	[79..3]
gi\|77972953, gi\|... - gi\|77972953\|ref\|ZP_00828507.1\| COG0695: Glutaredoxin and related proteins [Yersinia frederiksenii AT...	108.0	[0..2]	[79..3]
gi\|83369171, gi\|... - gi\|83369171\|ref\|ZP_00914028.1\| Glutaredoxin, GrxC [Rhodobacter sphaeroides ATCC 17025], gi\|83361085\|...	107.0	[0..1]	[79..1]
gi\|77464773, gi\|... - gi\|77464773\|ref\|YP_354277.1\| glutaredoxin [Rhodobacter sphaeroides 2.4.1], gi\|77389191\|gb\|ABA80376.1... gi\|126105279, gi... - gi\|126463615\|ref\|YP_001044729.1\| glutaredoxin 3 [Rhodobacter sphaeroides ATCC 17029], gi\|126105279\|g... gi\|221161471, gi... - gi\|221640690\|ref\|YP_002526952.1\| Glutaredoxin 3 [Rhodobacter sphaeroides KD131], gi\|221161471\|gb\|ACM...	107.0	[0..1]	[79..1]
gi\|86556169, gi\|... - gi\|86607627\|ref\|YP_476389.1\| glutaredoxin 3 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|86556169\|gb\|ABD0... gi\|86556169, gi\|... - gi\|86607627\|ref\|YP_476389.1\| glutaredoxin 3 [Cyanobacteria bacterium Yellowstone B-Prime], gi\|865561...	107.0	[0..1]	[79..1]
gi\|85060164, gi\|... - gi\|85060164\|ref\|YP_455866.1\| glutaredoxin 3 [Sodalis glossinidius str. 'morsitans'], gi\|84780684\|dbj...	107.0	[0..2]	[79..3]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITIYTRND CVQCHATKRA MENRGFDFEM INVDRVPEAA EALRAQGFRQ LPVVIAGDLS  60
   61 WSGFRPDMIN RLHPAPHAAS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1h75A
Description:	Glutaredoxin-like NRDH-redoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: