YRC Public Data Repository - Protein Structure Prediction

Protein:	NPFF_BOVIN
Organism:	Bos taurus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPFF_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|109096952 - gi\|109096952\|ref\|XP_001106733.1\| PREDICTED: similar to neuropeptide FF-amide peptide precursor isofo...	149.0	[0..1]	[115..1]
gi\|116078040, gi... - gi\|148839300\|ref\|NP_001092116.1\| neuropeptide FF [Takifugu rubripes], gi\|116078042\|dbj\|BAF34884.1\| n...	147.0	[0..1]	[115..1]
gi\|114052450, gi... - gi\|116078056\|dbj\|BAF34891.1\| neuropeptide NPFF [Danio rerio], gi\|114052450\|ref\|NP_899189.2\| neuropep...	145.0	[0..1]	[115..1]
gi\|114644472 - gi\|114644472\|ref\|XP_001138078.1\| PREDICTED: neuropeptide FF-amide peptide isoform 1 [Pan troglodytes...	143.0	[0..18]	[115..17]
NPFF - neuropeptide FF-amide peptide precursor	141.0	[0..18]	[115..17]
NPFF_RAT - Pro-FMRFamide-related neuropeptide FF OS=Rattus norvegicus GN=Npff PE=3 SV=1	136.0	[0..1]	[115..1]
NPFF_MOUSE - Pro-FMRFamide-related neuropeptide FF OS=Mus musculus GN=Npff PE=3 SV=1	133.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDARQAAALL LVLLLVTDWS HAEGPGGRDG GDQIFMEEDS GAHPAQDAQT PRSLLRSLLQ  60
   61 AMQRPGRSPA FLFQPQRFGR NTRGSWSNKR LSPRAGEGLS SPFWSLAAPQ RFGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits