YRC Public Data Repository - Protein Structure Prediction

Protein:	NPB_BOVIN
Organism:	Bos taurus
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPB_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|47223854 - gi\|47223854\|emb\|CAG06031.1\| unnamed protein product [Tetraodon nigroviridis]	174.0	[0..6]	[120..8]
gi\|188219655, gi... - gi\|68441949\|ref\|XP_692220.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|188219655\|ref\|NP_0011...	165.0	[0..5]	[120..7]
gi\|109119139 - gi\|109119139\|ref\|XP_001112472.1\| PREDICTED: similar to preproneuropeptide B [Macaca mulatta]	162.0	[0..1]	[121..1]
NPB - neuropeptide B	158.0	[0..1]	[120..1]
NPB_MOUSE - Neuropeptide B OS=Mus musculus GN=Npb PE=1 SV=1	149.0	[0..25]	[121..22]
NPB_RAT - Neuropeptide B OS=Rattus norvegicus GN=Npb PE=2 SV=1	143.0	[0..25]	[121..22]
NPW_PIG - Neuropeptide W OS=Sus scrofa GN=NPW PE=1 SV=1	85.0	[0..25]	[77..33]
gi\|73964738 - gi\|73964738\|ref\|XP_849890.1\| PREDICTED: similar to preproneuropeptide B [Canis familiaris]	85.0	[0..71]	[121..6]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPAMLVAA ALALCLLLAS PGLAWYKPTA GQGYYSVGRA AGLLSGFHRS PYARRSEPRG  60
   61 GTRSLGGVGT FREMRPNLRS LAVCVEEVTP NLQSCEPLPD GRATFQCKAD VFLSLSASDC 120
  121 RK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits