YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10_SULTO, NO1...
Organism:	Sulfolobus tokodaii
Length:	56 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10_SULTO, NO1....

Description	E-value	Query Range	Subject Range
NOP10_SULSO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus GN=SSO7115 PE=3 SV=1, (Q97Z78) Ribosome... NOP10_SULSO - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 113...	85.0	[0..1]	[56..1]
NOP10_PYRKO - Ribosome biogenesis protein Nop10 OS=Pyrococcus kodakaraensis GN=TK1101 PE=3 SV=1 NOP10_THEKO - Ribosome biogenesis protein Nop10 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KO...	83.0	[0..1]	[52..1]
gi\|88192801, gi\|... - gi\|88192802\|pdb\|2EY4\|F Chain F, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex, gi\|88192801\|pdb\|2EY4...	80.0	[0..1]	[52..1]
NOP10_PYRAB, NO1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi GN=PYRAB08470 PE=1 SV=1, (Q9V0E3) Ribosome bi... NOP10_PYRAB - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nop10 PE=1 SV=1	79.0	[0..1]	[52..1]
gi\|14591746 - gi\|14591746\|ref\|NP_142880.1\| H/ACA RNA-protein complex component Nop10p [Pyrococcus horikoshii OT3]	79.0	[0..1]	[52..1]
NO10_PYRFU, NOP1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus GN=PF1141 PE=1 SV=1, (Q8U1R4) Ribosome biog... NOP10_PYRFU - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / ...	79.0	[0..1]	[52..1]
gi\|49121065, gi\|... - gi\|67902534\|ref\|XP_681523.1\| hypothetical protein AN8254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	76.0	[0..9]	[54..10]
gi\|56471997, gi\|... - gi\|67479055\|ref\|XP_654909.1\| ribosome biogenesis protein Nop10 [Entamoeba histolytica HM-1:IMSS], gi...	76.0	[0..3]	[54..1]
gi\|47213487 - gi\|47213487\|emb\|CAF91144.1\| unnamed protein product [Tetraodon nigroviridis]	76.0	[0..10]	[54..11]
NOP10_DANRE - H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1	76.0	[0..12]	[54..13]

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Predicted Domain #1

Region A:
Residues: [1-56]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWKIKKCPK DCTYTLKDIC PICGTPTIIP HPARFSPVDK YVKYRIEIKK GIKLNC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2ey4E
Description:	Crystal Structure of a Cbf5-Nop10-Gar1 Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits