YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10_DANRE
Organism:	Danio rerio
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10_DANRE.

Description	E-value	Query Range	Subject Range
gi\|47213487 - gi\|47213487\|emb\|CAF91144.1\| unnamed protein product [Tetraodon nigroviridis]	108.0	[0..1]	[64..1]
NOP10_MOUSE - H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus GN=Nop10 PE=3 SV=1 gi\|149022902, gi... - gi\|186910255\|ref\|NP_001119572.1\| nucleolar protein family A, member 3 [Rattus norvegicus], gi\|149022... NOP10 - NOP10 ribonucleoprotein homolog (yeast) gi\|114656176, gi... - gi\|114656176\|ref\|XP_001165865.1\| PREDICTED: nucleolar protein family A, member 3 isoform 2 [Pan trog...	106.0	[0..1]	[64..1]
gi\|62859217, gi\|... - gi\|62859217\|ref\|NP_001016163.1\| nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs) [X...	105.0	[0..1]	[64..1]
gi\|73999753 - gi\|73999753\|ref\|XP_849017.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Canis famil...	105.0	[0..1]	[64..103]
gi\|110749879 - gi\|110749879\|ref\|XP_001120529.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Apis me...	105.0	[0..1]	[62..1]
gi\|73587177, gi\|... - gi\|76627351\|ref\|XP_873856.1\| PREDICTED: hypothetical protein [Bos taurus], gi\|73587177\|gb\|AAI03379.1...	104.0	[0..1]	[64..1]
gi\|91080289 - gi\|91080289\|ref\|XP_973962.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	104.0	[0..1]	[63..1]
gi\|49121065, gi\|... - gi\|67902534\|ref\|XP_681523.1\| hypothetical protein AN8254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	103.0	[0..1]	[59..1]
gi\|157116047, gi... - gi\|157116047\|ref\|XP_001658356.1\| hypothetical protein AaeL_AAEL007431 [Aedes aegypti], gi\|108876656\|...	103.0	[0..1]	[63..1]
AGAP005149-PA - H/ACA ribonucleoprotein complex subunit 3\|protein_coding\|2L:10577719:10577972:-1\|gene:AGAP005149 gi\|55240537, gi\|... - gi\|58385557\|ref\|XP_314037.2\| AGAP005149-PA [Anopheles gambiae str. PEST], gi\|55240537\|gb\|EAA09445.2\|...	102.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLQFYLNEN GERVYTLKKV DPSGQPTSSA HPARFSPDDK FSRHRVTIKK RFGLLLTQQP  60
   61 RPVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1y2yA
Description:	Structural Characterization of Nop10p using Nuclear Magnetic Resonance Spectroscopy
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	3.61380698450754	bayes_pls_golite062009
nucleic acid binding	2.36306971710899	bayes_pls_golite062009
binding	2.07200237133183	bayes_pls_golite062009
protein binding	0.377070376016177	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: