YRC Public Data Repository - Protein Structure Prediction

Protein:	NANO3_MOUSE
Organism:	Mus musculus
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NANO3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62665027, gi\|... - gi\|62665027\|ref\|XP_222459.2\| PREDICTED: similar to nanos homolog 3 [Rattus norvegicus], gi\|157786962...	274.0	[0..1]	[178..1]
gi\|110611853 - gi\|110611853\|gb\|AAI19515.1\| Nanos3 protein [Mus musculus]	262.0	[0..1]	[178..1]
ENSPTRT00000066469 - null NANOS3 - nanos homolog 3 (Drosophila)	203.0	[0..1]	[141..1]
gi\|76621377 - gi\|76621377\|ref\|XP_601672.2\| PREDICTED: similar to nanos homolog 3 (Drosophila) (predicted) [Bos tau...	200.0	[0..1]	[178..1]
gi\|109123675 - gi\|109123675\|ref\|XP_001111100.1\| PREDICTED: nanos homolog 3 (Drosophila) isoform 1 [Macaca mulatta]	199.0	[0..1]	[141..1]
gi\|73986811 - gi\|73986811\|ref\|XP_542028.2\| PREDICTED: similar to nanos homolog 3 [Canis familiaris]	194.0	[0..1]	[161..1]
gi\|114675697 - gi\|114675697\|ref\|XP_001171060.1\| PREDICTED: similar to NANOS3 protein [Pan troglodytes]	193.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTFNLWTDY LGLARLVGAL HKEEELDVRL DPKPEPKPSS ESQQASKESS AAPERLCSFC  60
   61 KHNGESRAIY QSHVLKDEAG RVLCPILRDY VCPQCGATQE HAHTRRFCPL TSQGYTSVYC 120
  121 YTTRNSAGKK LTRPDKAKTQ DAGHRLGGEA AAGVYAGSKS GRKPPGPSPS ACCPSTTA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.958607
Match:	PF05741.4
Description:	No description for PF05741.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits