YRC Public Data Repository - Protein Structure Prediction

Protein:	NLTP1_SOLLC
Organism:	Solanum lycopersicum
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NLTP1_SOLLC.

Description	E-value	Query Range	Subject Range
gi\|21668053 - gi\|21668053\|gb\|AAM74206.1\|AF519812_1 non-specific lipid transfer protein [Nicotiana tabacum]	148.0	[0..1]	[114..1]
gi\|110962345 - gi\|110962345\|gb\|ABH03042.1\| non-specific lipid transfer protein [Solanum sogarandinum]	145.0	[0..1]	[114..1]
NLTP1_SOLPN - Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1	145.0	[0..1]	[114..1]
gi\|71360928 - gi\|71360928\|emb\|CAJ19705.1\| non-specific lipid transfer protein [Solanum lycopersicum]	143.0	[0..1]	[114..1]
NLTP2_SOLCI - Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1	143.0	[0..1]	[114..1]
gi\|60459407 - gi\|60459407\|gb\|AAX20049.1\| putative non-specific lipid transfer protein [Capsicum annuum]	142.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMVSKIACF VLLCMVVVAP HAEALTCGQV TAGLAPCLPY LQGRGPLGGC CGGVKNLLGS  60
   61 AKTTADRKTA CTCLKSAANA IKGIDLNKAA GIPSVCKVNI PYKISPSTDC STVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1t12A
Description:	Solution Structure of a new LTP1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits