YRC Public Data Repository - Protein Structure Prediction

Protein:	NIKE_ECOLI
Organism:	Escherichia coli
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIKE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	340.0	[0..2]	[267..4]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	339.0	[0..2]	[267..4]
gi\|56963011, gi\|... - gi\|56963011\|ref\|YP_174738.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	337.0	[0..2]	[265..5]
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	337.0	[0..2]	[267..7]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	335.0	[0..3]	[267..13]
gi\|163860779, gi... - gi\|89206179\|ref\|ZP_01184741.1\| ABC transporter related [Bacillus weihenstephanensis KBAB4], gi\|89155...	332.0	[0..1]	[267..1]
gi\|47568111, gi\|... - gi\|47568111\|ref\|ZP_00238816.1\| peptide ABC transporter, ATP-binding protein [Bacillus cereus G9241],...	331.0	[0..1]	[267..1]
gi\|89158826, gi\|... - gi\|89211579\|ref\|ZP_01189937.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	330.0	[0..3]	[268..8]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLNISGLS HHYAHGGFNG KHQHQAVLNN VSLTLKSGET VALLGRSGCG KSTLARLLVG  60
   61 LESPAQGNIS WRGEPLAKLN RAQRKAFRRD IQMVFQDSIS AVNPRKTVRE ILREPMRHLL 120
  121 SLKKSEQLAR ASEMLKAVDL DDSVLDKRPP QLSGGQLQRV CLARALAVEP KLLILDEAVS 180
  181 NLDLVLQAGV IRLLKKLQQQ FGTACLFITH DLRLVERFCQ RVMVMDNGQI VETQVVGEKL 240
  241 TFSSDAGRVL QNAVLPAFPV RRRTTEKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits