YRC Public Data Repository - Protein Structure Prediction

Protein:	NIKC_ECOLI
Organism:	Escherichia coli
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIKC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|150390667, gi... - gi\|77683645\|ref\|ZP_00799091.1\| Binding-protein-dependent transport systems inner membrane component ...	241.0	[0..1]	[272..32]
gi\|110620064, gi... - gi\|147921516\|ref\|YP_684668.1\| putative ABC-type peptide transport system, permease component 2 [uncu...	236.0	[0..3]	[273..38]
gi\|134052991, gi... - gi\|88945336\|ref\|ZP_01148513.1\| oligopeptide ABC transporter permease [Desulfotomaculum reducens MI-1...	236.0	[0..2]	[273..25]
DPPC_BACPE - Dipeptide transport system permease protein DppC OS=Bacillus pseudofirmus (strain OF4) GN=dppC PE=3 ... gi\|11277274, gi\|... - gi\|1813497\|gb\|AAB41690.1\| dipeptide transporter protein DppC [Bacillus firmus], pir\|\|T44637 dipeptid... DPPC_BACPF - Dipeptide transport system permease protein dppC OS=Bacillus pseudofirmus GN=dppC PE=3 SV=1	236.0	[0..2]	[272..33]
gi\|23100522, gi\|... - gi\|23100522\|ref\|NP_693989.1\| oligopeptide ABC transporter permease [Oceanobacillus iheyensis HTE831]...	235.0	[0..1]	[272..28]
gi\|158140582, gi... - gi\|158320383\|ref\|YP_001512890.1\| binding-protein-dependent transport systems inner membrane componen...	234.0	[0..1]	[272..31]
gi\|10172642, gi\|... - gi\|15612593\|ref\|NP_240896.1\| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi... gi\|25296705 - pir\|\|F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...	233.0	[0..3]	[272..31]
gi\|56378846, gi\|... - gi\|56419004\|ref\|YP_146322.1\| dipeptide ABC transporter (permease) [Geobacillus kaustophilus HTA426],...	232.0	[0..2]	[272..28]
gi\|51974475, gi\|... - gi\|52141006\|ref\|YP_085823.1\| oligopeptide ABC transporter, permease [Bacillus cereus E33L], gi\|51974...	229.0	[0..3]	[273..29]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFFLSSRWS VRLALIIIAL LALIALTSQW WLPYDPQAID LPSRLLSPDA QHWLGTDHLG  60
   61 RDIFSRLMAA TRVSLGSVMA CLLLVLTLGL VIGGSAGLIG GRVDQATMRV ADMFMTFPTS 120
  121 ILSFFMVGVL GTGLTNVIIA IALSHWAWYA RMVRSLVISL RQREFVLASR LSGAGHVRVF 180
  181 VDHLAGAVIP SLLVLATLDI GHMMLHVAGM SFLGLGVTAP TAEWGVMIND ARQYIWTQPL 240
  241 QMFWPGLALF ISVMAFNLVG DALRDHLDPH LVTEHAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	2onkC
Description:	No description for 2onkC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits