YRC Public Data Repository - Protein Structure Prediction

Protein:	NINJ2_RAT
Organism:	Rattus norvegicus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NINJ2_RAT.

Description	E-value	Query Range	Subject Range
gi\|73947188 - gi\|73947188\|ref\|XP_853215.1\| PREDICTED: similar to ninjurin 1 [Canis familiaris]	191.0	[0..19]	[131..187]
gi\|109095031 - gi\|109095031\|ref\|XP_001095186.1\| PREDICTED: similar to ninjurin 2 [Macaca mulatta]	191.0	[0..1]	[144..46]
gi\|50729000 - gi\|50729000\|ref\|XP_416382.1\| PREDICTED: similar to ninjurin 2 [Gallus gallus]	191.0	[0..1]	[138..212]
gi\|114625612 - gi\|114625612\|ref\|XP_528716.2\| PREDICTED: similar to NINJ1 protein [Pan troglodytes]	191.0	[0..15]	[131..340]
gi\|91083873 - gi\|91083873\|ref\|XP_974306.1\| PREDICTED: similar to AGAP006745-PA [Tribolium castaneum]	189.0	[0..9]	[134..123]
gi\|119609365, gi... - gi\|39725946\|ref\|NP_057617.2\| ninjurin 2 [Homo sapiens], gi\|119609365\|gb\|EAW88959.1\| ninjurin 2, isof... gi\|157169758, gi... - gi\|157169758\|gb\|AAI53187.1\| Ninjurin 2 [synthetic construct], gi\|151555093\|gb\|AAI48621.1\| Ninjurin 2... HGNC:7825\|MIM:60... - 2	183.0	[0..1]	[144..47]
gi\|108880740, gi... - gi\|157137907\|ref\|XP_001664071.1\| ninjurin a [Aedes aegypti], gi\|108880740\|gb\|EAT44965.1\| ninjurin a ...	181.0	[0..15]	[131..183]
NINJ2_MOUSE - Ninjurin-2 OS=Mus musculus GN=Ninj2 PE=2 SV=1	181.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDREIIHL QHRHSTPGGN QRHINLNHYA TKKSVAESML DVALFMSNAM RLKSVLEQGP  60
   61 FSQYYTTLLT LISASLLLQV VIGILLVVIA RLNLNEVENQ WRLNQLNNAA TTLVFITVVI 120
  121 NIFITAFGAH KTGSVAARTS SNPI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.420216
Match:	PF04923.3
Description:	No description for PF04923.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.928	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.881	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.857	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.857	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.857	N/A	N/A	f.21.2	Fumarate reductase respiratory complex transmembrane subunits
View	Download	0.855	N/A	N/A	a.47.4	Description not found.
View	Download	0.789	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.788	N/A	N/A	a.24.3	Cytochromes
View	Download	0.732	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.727	N/A	N/A	a.24.3	Cytochromes
View	Download	0.653	N/A	N/A	a.7.8	GAT domain
View	Download	0.409	N/A	N/A	a.7.8	GAT domain
View	Download	0.387	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits