YRC Public Data Repository - Protein Structure Prediction

Protein:	NHAB_ECOLI
Organism:	Escherichia coli
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHAB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	242.0	[0..15]	[496..911]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	226.0	[0..13]	[494..468]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	226.0	[0..18]	[492..581]
gi\|66847808, gi\|... - gi\|70990654\|ref\|XP_750176.1\| plasma membrane phosphate transporter Pho87 [Aspergillus fumigatus Af29...	225.0	[0..18]	[496..596]
NHAB_SHESA - Na(+)/H(+) antiporter NhaB OS=Shewanella sp. (strain ANA-3) GN=nhaB PE=3 SV=1	222.0	[0..1]	[508..1]
gi\|26247499, gi\|... - gi\|26247499\|ref\|NP_753539.1\| Na(+)/H(+) antiporter 2 [Escherichia coli CFT073], gi\|26107900\|gb\|AAN80...	221.0	[0..1]	[513..19]
NHAB_SHEON - Na(+)/H(+) antiporter NhaB OS=Shewanella oneidensis (strain MR-1) GN=nhaB PE=3 SV=1 SO2886 - Na+/H+ antiporter	221.0	[0..1]	[508..1]
NHAB_SALTI - Na(+)/H(+) antiporter NhaB OS=Salmonella typhi GN=nhaB PE=3 SV=1 NHAB_SALA4 - Na(+)/H(+) antiporter NhaB OS=Salmonella agona (strain SL483) GN=nhaB PE=3 SV=1 gi\|29141546, gi\|... - gi\|29141546\|ref\|NP_804888.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serovar T... gi\|214002618 - gi\|214002618\|ref\|ZP_03413353.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serova... gi\|238912130 - gi\|238912130\|ref\|ZP_04655967.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serova... gi\|213857607 - gi\|213857607\|ref\|ZP_03384578.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serova... gi\|16760696 - gi\|16760696\|ref\|NP_456313.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serovar T... NHAB_SALTI - Na(+)/H(+) antiporter nhaB OS=Salmonella typhi GN=nhaB PE=3 SV=1 gi\|213615815 - gi\|213615815\|ref\|ZP_03371641.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serova... gi\|213426620 - gi\|213426620\|ref\|ZP_03359370.1\| sodium/proton antiporter [Salmonella enterica subsp. enterica serova...	221.0	[0..1]	[513..1]
NHAB_SHEAM - Na(+)/H(+) antiporter NhaB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=nhaB PE=3 SV=1	220.0	[0..1]	[511..1]
lcl\|NC_016856.1_... - [gene=nhaB] [protein=sodium/proton antiporter] [protein_id=YP_005237742.1] [location=1917517..191906... NHAB_SALTY - Na(+)/H(+) antiporter NhaB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nhaB P... NHAB_SALTY - Na(+)/H(+) antiporter nhaB OS=Salmonella typhimurium GN=nhaB PE=3 SV=1 gi\|205339309, gi... - gi\|205339309\|gb\|EDZ26073.1\| Na+/H+ antiporter NhaB [Salmonella enterica subsp. enterica serovar Heid... NHAB_SALTY - Na(+)/H(+) antiporter nhaB OS=Salmonella typhimurium GN=nhaB PE=3 SV=1 NHAB_SALHS - Na(+)/H(+) antiporter NhaB OS=Salmonella heidelberg (strain SL476) GN=nhaB PE=3 SV=1 gi\|167993257, gi... - gi\|205328673\|gb\|EDZ15437.1\| Na+/H+ antiporter NhaB [Salmonella enterica subsp. enterica serovar 4,[5...	220.0	[0..1]	[513..1]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISWGRALW RNFLGQSPDW YKLALIIFLI VNPLIFLISP FVAGWLLVAE FIFTLAMALK  60
   61 CYPLLPGGLL AIEAVFIGMT SAEHVREEVA ANLEVLLLLM FMVAGIYFMK QLLLFIFTRL 120
  121 LLSIRSKMLL SLSFCVAAAF LSAFLDALTV VAVVISVAVG FYGIYHRVAS SRTEDTDLQD 180
  181 DSHIDKHYKV VLEQFRGFLR SLMMHAGVGT ALGGVMTMVG EPQNLIIAKA AGWHFGDFFL 240
  241 RMSPVTVPVL ICGLLTCLLV EKLRWFGYGE TLPEKVREVL QQFDDQSRH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [290-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRTRQDKIRL IVQAIIGVWL VTALALHLAE VGLIGLSVII LATSLTGVTD EHAIGKAFTE  60
   61 SLPFTALLTV FFSVVAVIID QQLFSPIIQF VLQASEHAQL SLFYIFNGLL SSISDNVFVG 120
  121 TIYINEAKAA MESGAITLKQ YELLAVAINT GTNLPSVATP NGQAAFLFLL TSALAPLIRL 180
  181 SYGRMVWMAL PYTLVLTLVG LLCVEFTLAP VTEWFMQMGW IATL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits