YRC Public Data Repository - Protein Structure Prediction

Protein:	NPY_XENLA
Organism:	Xenopus laevis
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPY_XENLA.

Description	E-value	Query Range	Subject Range
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	163.0	[0..1]	[97..1]
gi\|51513383 - gi\|51513383\|gb\|AAH80407.1\| MGC86288 protein [Xenopus laevis]	163.0	[0..1]	[97..1]
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	163.0	[0..1]	[97..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	159.0	[0..1]	[97..1]
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1	159.0	[0..1]	[97..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	157.0	[0..1]	[97..1]
gi\|49473436 - gi\|49473436\|gb\|AAT66407.1\| neuropeptide Y [Ambystoma mexicanum]	156.0	[0..3]	[97..4]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1	156.0	[0..1]	[97..2]
gi\|124000283, gi... - gi\|124000283\|gb\|ABM87650.1\| neuropeptide Y [synthetic construct], gi\|123993319\|gb\|ABM84261.1\| neurop... HGNC:7955\|MIM:16... - Y NPY - neuropeptide Y	154.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGNMRLWMS VLTLCLSMLI CLGTFAEAYP SKPDNPGEDA PAEDMAKYYS ALRHYINLIT  60
   61 RQRYGKRSSP ETMLSDVWWR ENTENIPRSR FEDPPMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits