YRC Public Data Repository - Protein Structure Prediction

Protein:	NPY_TYPNA
Organism:	Typhlonectes natans
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPY_TYPNA.

Description	E-value	Query Range	Subject Range
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	159.0	[0..1]	[97..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	159.0	[0..1]	[97..1]
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1	156.0	[0..1]	[97..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	156.0	[0..1]	[97..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	154.0	[0..1]	[97..1]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1	154.0	[0..1]	[97..2]
gi\|49473436 - gi\|49473436\|gb\|AAT66407.1\| neuropeptide Y [Ambystoma mexicanum]	153.0	[0..3]	[97..4]
gi\|124000283, gi... - gi\|124000283\|gb\|ABM87650.1\| neuropeptide Y [synthetic construct], gi\|123993319\|gb\|ABM84261.1\| neurop... HGNC:7955\|MIM:16... - Y NPY - neuropeptide Y	152.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSMRLWLS VLTFTLSLLI CLGTLADAYP SKPDNPGEDA PAEDMAKYYS ALRHYINLIT  60
   61 RQRYGKRSNP ETMVSDVWWR ESTENIPRSR FEDPSMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.813	a.64.1	Saposin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits