YRC Public Data Repository - Protein Structure Prediction

Protein:	NPY_CHICK
Organism:	Gallus gallus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPY_CHICK.

Description	E-value	Query Range	Subject Range
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1	160.0	[0..1]	[97..1]
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	160.0	[0..1]	[97..1]
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	160.0	[0..1]	[97..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	159.0	[0..1]	[97..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	157.0	[0..1]	[97..1]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1	156.0	[0..1]	[97..2]
gi\|49473436 - gi\|49473436\|gb\|AAT66407.1\| neuropeptide Y [Ambystoma mexicanum]	155.0	[0..3]	[97..4]
gi\|73976504 - gi\|73976504\|ref\|XP_532492.2\| PREDICTED: similar to Neuropeptide Y precursor [Canis familiaris]	154.0	[0..1]	[97..1]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGTMRLWVS VLTFALSLLI CLGTLAEAYP SKPDSPGEDA PAEDMARYYS ALRHYINLIT  60
   61 RQRYGKRSSP ETLISDLLLR ESTENIPRSR FEDPSMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits