YRC Public Data Repository - Protein Structure Prediction

Protein:	NARJ_ECOLI
Organism:	Escherichia coli
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NARJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82776571, gi\|... - gi\|82776571\|ref\|YP_402920.1\| nitrate reductase 1, delta subunit, assembly function [Shigella dysente...	210.0	[0..1]	[236..1]
gi\|81245730, gi\|... - gi\|82544319\|ref\|YP_408266.1\| nitrate reductase 1 delta subunit, assembly function [Shigella boydii S...	210.0	[0..1]	[236..1]
gi\|83569298, gi\|... - gi\|83569298\|ref\|ZP_00920754.1\| COG2180: Nitrate reductase delta subunit [Shigella dysenteriae 1012],...	210.0	[0..1]	[236..1]
gi\|194408215, gi... - gi\|194449911\|ref\|YP_002045805.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmone... lcl\|NC_016856.1_... - [gene=narJ] [protein=nitrate reductase 1 subunit delta] [protein_id=YP_005237689.1] [location=comple... gi\|197211965, gi... - gi\|197248262\|ref\|YP_002146268.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmone... gi\|205339536, gi... - gi\|205339536\|gb\|EDZ26300.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|168820498, gi... - gi\|205342690\|gb\|EDZ29454.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|205321757, gi... - gi\|205321757\|gb\|EDZ09596.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|167993202, gi... - gi\|205328691\|gb\|EDZ15455.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|161613746, gi... - gi\|161613746\|ref\|YP_001587711.1\| hypothetical protein SPAB_01471 [Salmonella enterica subsp. enteric... gi\|16420291, gi\|... - gi\|16765103\|ref\|NP_460718.1\| nitrate reductase 1 delta subunit [Salmonella typhimurium LT2], gi\|1642... gi\|62127959, gi\|... - gi\|62180326\|ref\|YP_216743.1\| nitrate reductase 1, delta subunit, chaperone required for molybdenum c... gi\|197261667, gi... - gi\|197261667\|ref\|ZP_03161741.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonel... gi\|224583748, gi... - gi\|224583748\|ref\|YP_002637546.1\| respiratory nitrate reductase 1 delta chain [Salmonella enterica su...	210.0	[0..1]	[236..1]
gi\|157066416, gi... - gi\|75195379\|ref\|ZP_00705449.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli HS], gi\|15... gi\|218360550, gi... - gi\|218553782\|ref\|YP_002386695.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|75190280, gi\|... - gi\|75190280\|ref\|ZP_00703547.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E24377A], ... gi\|218351474, gi... - gi\|218694742\|ref\|YP_002402409.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|187730812, gi... - gi\|75179175\|ref\|ZP_00699193.1\| COG2180: Nitrate reductase delta subunit [Shigella boydii BS512], gi\|... gi\|251784734, gi... - gi\|251784734\|ref\|YP_002999038.1\| hypothetical protein B21_01214 [Escherichia coli BL21], gi\|24237700... gi\|194424023, gi... - gi\|83587370\|ref\|ZP_00925998.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli 101-1], gi... gi\|209918471, gi... - gi\|209918471\|ref\|YP_002292555.1\| nitrate reductase 1 delta subunit [Escherichia coli SE11], gi\|20991... gi\|74312433, gi\|... - gi\|74312433\|ref\|YP_310852.1\| nitrate reductase 1, delta subunit, assembly function [Shigella sonnei ... gi\|253973212, gi... - gi\|254161311\|ref\|YP_003044419.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|188495412, gi... - gi\|75511740\|ref\|ZP_00734369.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli 53638], gi... gi\|254288119, gi... - gi\|254288119\|ref\|YP_003053867.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|192956733, gi... - gi\|75235262\|ref\|ZP_00719499.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E110019], ... gi\|75230212, gi\|... - gi\|75230212\|ref\|ZP_00716713.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli B7A], gi\|1...	209.0	[0..1]	[236..1]
gi\|110614781, gi... - gi\|110805233\|ref\|YP_688753.1\| nitrate reductase 1, delta subunit [Shigella flexneri 5 str. 8401], gi... gi\|30062750, gi\|... - gi\|30062750\|ref\|NP_836921.1\| nitrate reductase 1, delta subunit [Shigella flexneri 2a str. 2457T], g... gi\|24051532, gi\|... - gi\|24112625\|ref\|NP_707135.1\| nitrate reductase 1, delta subunit [Shigella flexneri 2a str. 301], gi\|...	209.0	[0..1]	[236..1]
gi\|200389843, gi... - gi\|200389843\|ref\|ZP_03216454.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonel... gi\|197362241, gi... - gi\|197362241\|ref\|YP_002141878.1\| respiratory nitrate reductase 1 delta chain [Salmonella enterica su... gi\|194458164, gi... - gi\|194471800\|ref\|ZP_03077784.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonel... gi\|238913662 - gi\|238913662\|ref\|ZP_04657499.1\| respiratory nitrate reductase 1 delta chain [Salmonella enterica sub... gi\|194446276, gi... - gi\|194446276\|ref\|YP_002041012.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmone... gi\|195634398, gi... - gi\|195634398\|gb\|EDX52750.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|168260016, gi... - gi\|205350624\|gb\|EDZ37255.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|205332103, gi... - gi\|205332103\|gb\|EDZ18867.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|56413316, gi\|... - gi\|56413316\|ref\|YP_150391.1\| respiratory nitrate reductase 1 delta chain [Salmonella enterica subsp....	209.0	[0..1]	[236..1]
gi\|25300709 - gi\|25300709\|pir\|\|B85703 hypothetical protein narJ [imported] - Escherichia coli (strain O157:H7, su... gi\|12514947, gi\|... - gi\|15801457\|ref\|NP_287474.1\| nitrate reductase 1, delta subunit, assembly function [Escherichia coli...	208.0	[0..1]	[236..1]
gi\|227836553, gi... - gi\|227886349\|ref\|ZP_04004154.1\| respiratory nitrate reductase 1 delta chain [Escherichia coli 83972]... gi\|26247552, gi\|... - gi\|26247552\|ref\|NP_753592.1\| respiratory nitrate reductase 1 delta chain [Escherichia coli CFT073], ... gi\|215264531, gi... - gi\|215486459\|ref\|YP_002328890.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n...	208.0	[0..1]	[236..1]
gi\|192927503, gi... - gi\|75257135\|ref\|ZP_00728671.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E22], gi\|1... gi\|218549082, gi... - gi\|218549082\|ref\|YP_002382873.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|194426047, gi... - gi\|75212663\|ref\|ZP_00712661.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli B171], gi\|...	207.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIELVIVSRL LEYPDAALWQ HQQEMFEAIA ASKNLPKEDA HALGIFLRDL TTMDPLDAQA  60
   61 QYSELFDRGR ATSLLLFEHV HGESRDRGQA MVDLLAQYEQ HGLQLNSREL PDHLPLYLEY 120
  121 LAQLPQSEAV EGLKDIAPIL ALLSARLQQR ESRYAVLFDL LLKLANTAID SDKVAEKIAD 180
  181 EARDDTPQAL DAVWEEEQVK FFADKGCGDS AITAHQRRFA GAVAPQYLNI TTGGQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1n1cA
Description:	TorA specific chaperone TorD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.685658944373883	bayes_pls_golite062009
protein binding	0.343281137579891	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: