YRC Public Data Repository - Protein Structure Prediction

Protein:	NAPD_ECOLI
Organism:	Escherichia coli
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62128468, gi\|... - gi\|62180835\|ref\|YP_217252.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica sero...	120.0	[0..1]	[87..90]
gi\|77958999 - gi\|77958999\|ref\|ZP_00823024.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	115.0	[0..2]	[87..3]
gi\|77960880 - gi\|77960880\|ref\|ZP_00824734.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	113.0	[0..3]	[87..4]
gi\|77974600 - gi\|77974600\|ref\|ZP_00830139.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	112.0	[0..3]	[87..4]
gi\|21958221, gi\|... - gi\|22125341\|ref\|NP_668764.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis KIM... gi\|45442438, gi\|... - gi\|45442438\|ref\|NP_993977.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis bio...	111.0	[0..3]	[87..6]
gi\|229899201, gi... - gi\|229899201\|ref\|ZP_04514344.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis biovar... gi\|108808224, gi... - gi\|108808224\|ref\|YP_652140.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis An... gi\|170023628, gi... - gi\|170023628\|ref\|YP_001720133.1\| assembly protein for periplasmic nitrate reductase [Yersinia pseudo... gi\|229895701, gi... - gi\|229895701\|ref\|ZP_04510872.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis Pestoi... gi\|108811509, gi... - gi\|229901773\|ref\|ZP_04516895.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis Nepal5... gi\|186699193, gi... - gi\|186896167\|ref\|YP_001873279.1\| assembly protein for periplasmic nitrate reductase [Yersinia pseudo... gi\|229838635, gi... - gi\|229838635\|ref\|ZP_04458794.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis biovar... gi\|149291513, gi... - gi\|149365100\|ref\|ZP_01887135.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis ... gi\|165935916, gi... - gi\|89104828\|ref\|ZP_01177360.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... Q668H9\|Q668H9_YERPS - Putative uncharacterized protein napD precursor - Yersinia pseudotuberculosis gi\|165926875, gi... - gi\|165926875\|ref\|ZP_02222707.1\| NapD protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|166011203, gi... - gi\|166011203\|ref\|ZP_02232101.1\| NapD protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|166212427, gi... - gi\|166212427\|ref\|ZP_02238462.1\| NapD protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167399389, gi... - gi\|167399389\|ref\|ZP_02304913.1\| NapD protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|167422713, gi... - gi\|167422713\|ref\|ZP_02314466.1\| NapD protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|167056460, gi... - gi\|167424578\|ref\|ZP_02316331.1\| NapD protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|167467009 - gi\|167467009\|ref\|ZP_02331713.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis ... gi\|51590359, gi\|... - gi\|51597077\|ref\|YP_071268.1\| assembly protein for periplasmic nitrate reductase [Yersinia pseudotube... gi\|77633172, gi\|... - gi\|77633172\|ref\|ZP_00795318.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|25303110 - pir\|\|AF0369 conserved hypothetical protein napD [imported] - Yersinia pestis (strain CO92) gi\|153949435, gi... - gi\|77629805\|ref\|ZP_00792391.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|218930084, gi... - gi\|218930084\|ref\|YP_002347959.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis...	111.0	[0..3]	[87..4]
gi\|77977007 - gi\|77977007\|ref\|ZP_00832469.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	110.0	[0..3]	[87..4]
gi\|112823693, gi... - gi\|113461650\|ref\|YP_719719.1\| periplasmic nitrate reductase chaperone NapD [Haemophilus somnus 129PT...	105.0	[0..3]	[85..75]
gi\|82776190, gi\|... - gi\|82776190\|ref\|YP_402539.1\| assembly protein for periplasmic nitrate reductase [Shigella dysenteria...	104.0	[0..1]	[87..1]
gi\|110806183, gi... - gi\|110806183\|ref\|YP_689703.1\| assembly protein for periplasmic nitrate reductase [Shigella flexneri ...	104.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTNWQVCSL VVQAKSERIS DISTQLNAFP GCEVAVSDAP SGQLIVVVEA EDSETLIQTI  60
   61 ESVRNVEGVL AVSLVYHQQE EQGEETP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	2jsxA
Description:	No description for 2jsxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits