YRC Public Data Repository - Protein Structure Prediction

Protein:	NAPB_HAEIN
Organism:	Haemophilus influenzae
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAPB_HAEIN.

Description	E-value	Query Range	Subject Range
gi\|145631407 - gi\|145631407\|ref\|ZP_01787177.1\| adenylate kinase [Haemophilus influenzae 22.4-21] gi\|144979173, gi... - gi\|145628703\|ref\|ZP_01784503.1\| diheme cytochrome C NapB [Haemophilus influenzae 22.1-21], gi\|144979... gi\|229846437, gi... - gi\|229846437\|ref\|ZP_04466545.1\| hypothetical protein CGSHi7P49H1_07190 [Haemophilus influenzae 7P49H... gi\|229812811, gi... - gi\|229844562\|ref\|ZP_04464702.1\| hypothetical protein CGSHi6P18H1_09610 [Haemophilus influenzae 6P18H... gi\|53733216 - gi\|53733216\|ref\|ZP_00156186.2\| COG3043: Nitrate reductase cytochrome c-type subunit [Haemophilus inf... gi\|53732958 - gi\|53732958\|ref\|ZP_00155354.2\| COG3043: Nitrate reductase cytochrome c-type subunit [Haemophilus inf... gi\|48868882 - ref\|ZP_00322170.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Haemophilus influenzae 86-0... gi\|144982944 - gi\|144982944\|gb\|EDJ90453.1\| adenylate kinase [Haemophilus influenzae R3021] gi\|148718734, gi... - gi\|148827492\|ref\|YP_001292245.1\| hypothetical protein CGSHiGG_04545 [Haemophilus influenzae PittGG],... gi\|148825369, gi... - gi\|148825369\|ref\|YP_001290122.1\| adenylate kinase [Haemophilus influenzae PittEE], gi\|148715529\|gb\|A... gi\|145272337, gi... - gi\|145638742\|ref\|ZP_01794351.1\| adenylate kinase [Haemophilus influenzae PittII], gi\|145272337\|gb\|ED...	218.0	[0..4]	[150..1]
gi\|77960882 - gi\|77960882\|ref\|ZP_00824736.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia mollar...	216.0	[0..2]	[149..7]
gi\|25321691 - pir\|\|A95346 NapB periplasmic nitrate reductase [imported] - Sinorhizobium meliloti (strain 1021) mag... gi\|16263126, gi\|... - gi\|16263126\|ref\|NP_435919.1\| NapB periplasmic nitrate reductase cytochrome c- type subunit [Sinorhiz...	216.0	[0..1]	[149..11]
gi\|77977005 - gi\|77977005\|ref\|ZP_00832467.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia interm...	215.0	[0..2]	[149..7]
gi\|113874544, gi... - gi\|150377296\|ref\|YP_001313891.1\| nitrate reductase cytochrome c-type subunit (NapB) [Sinorhizobium m...	214.0	[0..7]	[149..1]
gi\|238723681, gi... - gi\|77974598\|ref\|ZP_00830137.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia freder...	213.0	[0..1]	[149..6]
gi\|25321692 - pir\|\|AD0369 cytochrome C-type protein NapB precursor [imported] - Yersinia pestis (strain CO92) gi\|153949006, gi... - gi\|153949006\|ref\|YP_001400254.1\| citrate reductase cytochrome c-type subunit [Yersinia pseudotubercu... gi\|149365102, gi... - gi\|149365102\|ref\|ZP_01887137.1\| cytochrome C-type protein NapB precursor [Yersinia pestis CA88-4125]... gi\|115348693, gi... - gi\|16123214\|ref\|NP_406527.1\| cytochrome C-type protein NapB precursor [Yersinia pestis CO92], gi\|159... gi\|22125343, gi\|... - gi\|22125343\|ref\|NP_668766.1\| cytochrome c-type protein [Yersinia pestis KIM], gi\|21958223\|gb\|AAM8501... gi\|167467007 - gi\|167467007\|ref\|ZP_02331711.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|167398640, gi... - gi\|167398640\|ref\|ZP_02304164.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer...	210.0	[0..1]	[149..2]
gi\|75196245 - gi\|75196245\|ref\|ZP_00706315.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75211619 - gi\|75211619\|ref\|ZP_00711698.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75231459 - gi\|75231459\|ref\|ZP_00717828.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75259675 - gi\|75259675\|ref\|ZP_00730977.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|81245974, gi\|... - gi\|82544563\|ref\|YP_408510.1\| cytochrome c-type protein [Shigella boydii Sb227], gi\|81245974\|gb\|ABB66... gi\|26248587, gi\|... - gi\|26248587\|ref\|NP_754627.1\| Diheme cytochrome c napB precursor [Escherichia coli CFT073], gi\|261089... gi\|227887260, gi... - gi\|227887260\|ref\|ZP_04005065.1\| periplasmic nitrate reductase electron donor subunit [Escherichia co... gi\|83588187 - gi\|83588187\|ref\|ZP_00926812.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75176165 - gi\|75176165\|ref\|ZP_00696323.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Shigella boydii... gi\|75186999 - gi\|75186999\|ref\|ZP_00700266.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col...	210.0	[0..4]	[149..8]
NAPB_RHIGA - Periplasmic nitrate reductase, electron transfer subunit OS=Rhizobium galegae GN=napB PE=3 SV=1 gi\|5678641, gi\|3... - gi\|5678641\|gb\|AAD46690.1\|AF040988_5 cytochrome c type protein NapB precursor [Pseudomonas sp. G-179]...	210.0	[0..2]	[149..8]
gi\|238715267, gi... - gi\|77959001\|ref\|ZP_00823026.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia bercov...	210.0	[0..2]	[149..3]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINMTKQVSK ILAGLFTALF AGSLMASDAP AVGKDLTQAA ENIPPAFHNA PRQGELPALN  60
   61 YVNQPPMVPH SVANYQVTKN VNQCLNCHSP ENSRLSGATR ISPTHFMDRD GKVGSSSSPR 120
  121 RYFCLQCHVS QANVDPIVPN DFKPMKGYGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1jniA
Description:	Periplasmic nitrate reductase subunit NapB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits