YRC Public Data Repository - Protein Structure Prediction

Protein:	NAGZ_ECOLI
Organism:	Escherichia coli
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAGZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|20806741, gi\|... - gi\|33286394\|gb\|AAQ01678.1\| beta-glucosidase [Thermoanaerobacter tengcongensis], gi\|20806741\|ref\|NP_6... gi\|223490105, gi... - gi\|254478116\|ref\|ZP_05091499.1\| Glycosyl hydrolase family 3 N terminal domain protein [Carboxydibrac... gi\|20806741, gi\|... - gi\|20806741\|ref\|NP_621912.1\| Beta-glucosidase-related glycosidase [Thermoanaerobacter tengcongensis ...	362.0	[0..1]	[338..13]
NAGZ_SHIB3 - Beta-hexosaminidase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=nagZ PE=3 SV=1 NAGZ_SHIBS - Beta-hexosaminidase OS=Shigella boydii serotype 4 (strain Sb227) GN=nagZ PE=3 SV=1	357.0	[0..1]	[341..1]
NAGZ_SHISS - Beta-hexosaminidase OS=Shigella sonnei (strain Ss046) GN=nagZ PE=3 SV=1	356.0	[0..1]	[341..1]
NAGZ_SHIFL - Beta-hexosaminidase OS=Shigella flexneri GN=nagZ PE=3 SV=2 gi\|226898117, gi... - gi\|237706907\|ref\|ZP_04537388.1\| beta-hexosaminidase [Escherichia sp. 3_2_53FAA], gi\|226898117\|gb\|EEH... NAGZ_ECO45 - Beta-hexosaminidase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nagZ PE=3 SV=1 NAGZ_ECOUT - Beta-hexosaminidase OS=Escherichia coli (strain UTI89 / UPEC) GN=nagZ PE=3 SV=1 gi\|24051402, gi\|... - gi\|24112512\|ref\|NP_707022.1\| beta-hexosaminidase [Shigella flexneri 2a str. 301], gi\|24051402\|gb\|AAN...	354.0	[0..1]	[341..1]
NAGZ_SHIDS - Beta-hexosaminidase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nagZ PE=3 SV=1 gi\|209773074, gi... - gi\|209773074\|gb\|ACI84849.1\| beta-N-acetylglucosaminedase [Escherichia coli], gi\|209773068\|gb\|ACI8484...	354.0	[0..1]	[341..1]
gi\|15830739, gi\|... - gi\|15830739\|ref\|NP_309512.1\| beta-hexosaminidase [Escherichia coli O157:H7 str. Sakai], gi\|13360949\|... gi\|189370378, gi... - gi\|189405393\|ref\|ZP_02815092.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC869], g... gi\|189365189, gi... - gi\|189404504\|ref\|ZP_02789904.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4501], ... NAGZ_ECO57 - Beta-hexosaminidase OS=Escherichia coli O157:H7 GN=nagZ PE=3 SV=1 gi\|189403577, gi... - gi\|189403577\|ref\|ZP_02796339.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4486], ... gi\|189402505, gi... - gi\|189402505\|ref\|ZP_02782828.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4401], ... gi\|208737597, gi... - gi\|208822112\|ref\|ZP_03262431.1\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4042], ... gi\|208815385, gi... - gi\|208815385\|ref\|ZP_03256564.1\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4045], ... gi\|209773076, gi... - pir\|\|A85674 beta-N-acetylglucosaminedase [similarity] - Escherichia coli (strain O157:H7, substrain ... gi\|208808547, gi... - gi\|208808547\|ref\|ZP_03250884.1\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4206], ... gi\|189406285, gi... - gi\|189406285\|ref\|ZP_02827516.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC508], g... gi\|15801224, gi\|... - gi\|15801224\|ref\|NP_287241.1\| beta-hexosaminidase [Escherichia coli O157:H7 EDL933], gi\|12514654\|gb\|A... gi\|189010668, gi... - gi\|189010668\|ref\|ZP_02808484.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4076], ... gi\|188014595, gi... - gi\|188025143\|ref\|ZP_02776366.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4113], ... gi\|187767887, gi... - gi\|187776316\|ref\|ZP_02801805.2\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. EC4196], ... gi\|254792490, gi... - gi\|254792490\|ref\|YP_003077327.1\| beta-N-acetylglucosaminidase [Escherichia coli O157:H7 str. TW14359... gi\|217318477, gi... - gi\|217328050\|ref\|ZP_03444132.1\| beta-N-acetylhexosaminidase [Escherichia coli O157:H7 str. TW14588],... NAGZ_ECO5E - Beta-hexosaminidase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nagZ PE=3 SV=1	353.0	[0..1]	[341..1]
NAGZ_ECOK1 - Beta-hexosaminidase OS=Escherichia coli O1:K1 / APEC GN=nagZ PE=3 SV=1	353.0	[0..1]	[341..1]
NAGZ_SALPA - Beta-hexosaminidase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nagZ PE=3 SV=2 gi\|29142145, gi\|... - gi\|29142145\|ref\|NP_805487.1\| beta-hexosaminidase [Salmonella enterica subsp. enterica serovar Typhi ... NAGZ_SALTI - Beta-hexosaminidase OS=Salmonella typhi GN=nagZ PE=3 SV=1 gi\|16760084 - gi\|16760084\|ref\|NP_455701.1\| beta-hexosaminidase [Salmonella enterica subsp. enterica serovar Typhi ... NAGZ_SALTI - Beta-hexosaminidase OS=Salmonella typhi GN=nagZ PE=3 SV=1 NAGZ_SALPA - Beta-hexosaminidase OS=Salmonella paratyphi A GN=nagZ PE=3 SV=2	352.0	[0..1]	[341..1]
NAGZ_SALCH - Beta-hexosaminidase OS=Salmonella choleraesuis (strain SC-B67) GN=nagZ PE=3 SV=1 gi\|205357745, gi... - gi\|205357745\|ref\|ZP_02573106.2\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... NAGZ_SALG2 - Beta-hexosaminidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nagZ PE=3 SV=1 gi\|200389418, gi... - gi\|200389418\|ref\|ZP_03216029.1\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... NAGZ_SALDC - Beta-hexosaminidase OS=Salmonella dublin (strain CT_02021853) GN=nagZ PE=3 SV=1 NAGZ_SALPB - Beta-hexosaminidase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nagZ PE=3 SV=1 NAGZ_SALEP - Beta-hexosaminidase OS=Salmonella enteritidis PT4 (strain P125109) GN=nagZ PE=3 SV=1 gi\|205360071, gi... - gi\|205360071\|ref\|ZP_02834312.2\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... gi\|205336778, gi... - gi\|205359356\|ref\|ZP_02669211.2\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... gi\|205332704, gi... - gi\|205358661\|ref\|ZP_02658145.2\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=nagZ] [protein=beta-hexosaminidase] [protein_id=YP_005236966.1] [location=1250770..1251795] gi\|194457347, gi... - gi\|194470983\|ref\|ZP_03076967.1\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... NAGZ_SALTY - Beta-hexosaminidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nagZ PE=1 SV=... NAGZ_SALCH - Beta-hexosaminidase OS=Salmonella choleraesuis GN=nagZ PE=3 SV=1 NAGZ_SALHS - Beta-hexosaminidase OS=Salmonella heidelberg (strain SL476) GN=nagZ PE=3 SV=1 NAGZ_SALNS - Beta-hexosaminidase OS=Salmonella newport (strain SL254) GN=nagZ PE=3 SV=1 gi\|197301160, gi... - gi\|197301160\|ref\|ZP_02664170.2\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... gi\|197266052, gi... - gi\|197266052\|ref\|ZP_03166126.1\| beta-N-acetylhexosaminidase [Salmonella enterica subsp. enterica ser... NAGZ_SALTY - Beta-hexosaminidase OS=Salmonella typhimurium GN=nagZ PE=3 SV=1 NAGZ_SALA4 - Beta-hexosaminidase OS=Salmonella agona (strain SL483) GN=nagZ PE=3 SV=1 NAGZ_SALCH - Beta-hexosaminidase OS=Salmonella choleraesuis GN=nagZ PE=3 SV=1 NAGZ_SALSV - Beta-hexosaminidase OS=Salmonella schwarzengrund (strain CVM19633) GN=nagZ PE=3 SV=1 NAGZ_SALTY - Beta-hexosaminidase OS=Salmonella typhimurium GN=nagZ PE=3 SV=1 NAGZ_SALPB - Beta-hexosaminidase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nagZ PE=3 SV=1	352.0	[0..1]	[341..1]
gi\|30062640, gi\|... - gi\|30062640\|ref\|NP_836811.1\| beta-hexosaminidase [Shigella flexneri 2a str. 2457T], gi\|30040886\|gb\|A...	352.0	[0..1]	[341..1]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPVMLDVEG YELDAEEREI LAHPLVGGLI LFTRNYHDPA QLRELVRQIR AASRNRLVVA  60
   61 VDQEGGRVQR FREGFTRLPA AQSFAALSGM EEGGKLAQEA GWLMASEMIA MDIDISFAPV 120
  121 LDVGHISAAI GERSYHADPQ KALAIASRFI DGMHEAGMKT TGKHFPGHGA VTADSHKETP 180
  181 CDPRPQAEIR AKDMSVFSSL IRENKLDAIM PAHVIYSDVD PRPASGSPYW LKTVLRQELG 240
  241 FDGVIFSDDL SMEGAAIMGS YAERGQASLD AGCDMILVCN NRKGAVSVLD NLSPIKAERV 300
  301 TRLYHKGSFS RQELMDSARW KAISTRLNQL HERWQEEKAG H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.0
Match:	2oxnA
Description:	No description for 2oxnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits