YRC Public Data Repository - Protein Structure Prediction

Protein:	NADE_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	558 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADE_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|53764373, gi\|... - gi\|75906642\|ref\|YP_320938.1\| NAD synthetase [Anabaena variabilis ATCC 29413], gi\|75700367\|gb\|ABA2004...	436.0	[0..2]	[554..1]
gi\|25330095 - pir\|\|AF2116 NH(3)-dependent NAD(+) synthetase [imported] - Nostoc sp. (strain PCC 7120) gi\|17229977, gi\|... - gi\|17229977\|ref\|NP_486525.1\| NAD synthetase [Nostoc sp. PCC 7120], gi\|17131577\|dbj\|BAB74184.1\| NH(3)...	435.0	[0..2]	[554..1]
gi\|186468212, gi... - gi\|23124768\|ref\|ZP_00106736.1\| COG0171: NAD synthase [Nostoc punctiforme PCC 73102], gi\|186685760\|re...	429.0	[0..2]	[553..1]
gi\|91799932, gi\|... - gi\|92117038\|ref\|YP_576767.1\| NAD synthetase [Nitrobacter hamburgensis X14], gi\|91799932\|gb\|ABE62307....	424.0	[0..2]	[557..6]
gi\|83749198, gi\|... - gi\|83749198\|ref\|ZP_00946200.1\| Glutamine-dependent NAD(+) synthetase [Ralstonia solanacearum UW551],... gi\|207742674, gi... - gi\|207742674\|ref\|YP_002259066.1\| nh3-dependent nad+ synthetase protein [Ralstonia solanacearum IPO16...	423.0	[0..2]	[555..3]
gi\|27378891, gi\|... - gi\|27378891\|ref\|NP_770420.1\| NAD synthetase [Bradyrhizobium japonicum USDA 110], gi\|27352040\|dbj\|BAC...	422.0	[0..4]	[557..10]
gi\|15965599 - gi\|15965599\|ref\|NP_385952.1\| NAD synthetase [Sinorhizobium meliloti 1021] gi\|15074780 - gi\|15074780\|emb\|CAC46425.1\| Putative NH3-dependent NAD+ synthetase [Sinorhizobium meliloti 1021]	421.0	[0..2]	[557..11]
gi\|86282088, gi\|... - gi\|86357986\|ref\|YP_469878.1\| NAD synthetase [Rhizobium etli CFN 42], gi\|86282088\|gb\|ABC91151.1\| NAD(...	421.0	[0..1]	[556..10]
gi\|90105599, gi\|... - gi\|90423585\|ref\|YP_531955.1\| NAD synthetase [Rhodopseudomonas palustris BisB18], gi\|90105599\|gb\|ABD8...	420.0	[0..2]	[558..10]
gi\|89358588, gi\|... - gi\|89358588\|ref\|ZP_01196410.1\| NAD+ synthase [Xanthobacter autotrophicus Py2], gi\|89352765\|gb\|EAS180...	419.0	[0..4]	[555..25]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTIALAQLN PTIGAIAENA EKIVTAALQA QARGADLLLT PELALCGYPP KDLLLNPSFV  60
   61 EQLEEELQWL AEKMPPSIAI LVGTVTPHHQ AERQGQKKLW NSAVLIEQGQ IKQWFHKCLL 120
  121 PTYDVFDEDR YFASAAKSEY FIYKNVKIGV TICEDLWNDE AFWGQKFYQV NPLMDLIDQG 180
  181 VNLVVNLSAS PYSCGKHYLR ESLISHSAKR FNVPLIYVNQ VGGNDDLIFD GGSFAVNSQG 240
  241 KIIGRSPLFQ EDLALLSYDL SSGELTGQKL ASLPMVDTEE LWQALVLGVG DYLHKCGFSK 300
  301 AILGLSGGID SSLVAAIAVE ALGKENVLGI LMPSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	2dyuA
Description:	No description for 2dyuA was found.

Predicted Domain #2

Region A:
Residues: [336-558]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSSDHSIQDA LALAKNLGMN TQTIPIGPIM ATYDQALVPL FQDAPFGLAE ENLQSRIRGN  60
   61 LLMAIANKFG HLLLSTGNKS ELAVGYCTLY GDMNGGLAAI ADVPKTQVFE LCRWLNREQT 120
  121 IIPPSVLTKP PSAELKPGQV DTDSLPPYDV LDGILGRLVE KHQSPQEIIN AGFEREVVLK 180
  181 ICQLVQKSEF KRRQAAPGLK VTDRAFGSGW RMPIAQAFHP QGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	2e18A
Description:	No description for 2e18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits