YRC Public Data Repository - Protein Structure Prediction

Protein:	CE39995
Organism:	Caenorhabditis elegans
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39995.

Description	E-value	Query Range	Subject Range
gi\|157759143 - gi\|157759143\|ref\|XP_001671915.1\| Hypothetical protein CBG13913 [Caenorhabditis briggsae AF16] gi\|39585950, gi\|... - gi\|39585950\|emb\|CAE68239.1\| Hypothetical protein CBG13913 [Caenorhabditis briggsae], gi\|187028267\|em...	177.0	[0..1]	[146..5]
CE25630 - WBGene00022380 status:Partially_confirmed	175.0	[0..1]	[146..42]
gi\|108883517, gi... - gi\|157115311\|ref\|XP_001658194.1\| NADH:ubiquinone dehydrogenase, putative [Aedes aegypti], gi\|1088835...	171.0	[0..3]	[146..1]
gi\|91085133 - gi\|91085133\|ref\|XP_969714.1\| PREDICTED: similar to AGAP008653-PA [Tribolium castaneum]	169.0	[0..3]	[142..1]
gi\|125984440, gi... - gi\|54644302\|gb\|EAL33043.1\| GA16708 [Drosophila pseudoobscura pseudoobscura], gi\|125984440\|ref\|XP_001... gi\|194103341, gi... - gi\|195161370\|ref\|XP_002021541.1\| GL26457 [Drosophila persimilis], gi\|194103341\|gb\|EDW25384.1\| GL2645... gi\|125984440\|ref... - GA16708-PA [Drosophila pseudoobscura], GA16708 [Drosophila pseudoobscura pseudoobscura]	167.0	[0..3]	[144..1]
gi\|57096775 - gi\|57096775\|ref\|XP_532652.1\| PREDICTED: similar to 13kDa differentiation-associated protein [Canis f...	166.0	[0..9]	[143..4]
FBpp0307167, CG3... - This gene is referred to in FlyBase by the symbol Dmel\CG3214 (CG3214, FBgn0031436). It is a protein...	165.0	[0..3]	[144..1]
NDUAC_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1 gi\|222092839, gi... - gi\|223633908\|ref\|NP_001138660.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Ovis aries]...	165.0	[0..9]	[143..4]
gi\|38048633 - gi\|38048633\|gb\|AAR10219.1\| similar to Drosophila melanogaster CG3214 [Drosophila yakuba]	164.0	[0..3]	[144..1]
gi\|26369247, gi\|... - gi\|27228985\|ref\|NP_079827.2\| 13kDa differentiation-associated protein [Mus musculus], gi\|26369247\|db...	164.0	[0..9]	[143..8]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKAWLGID KIQKFGQMVK EIGGVKAVLK KRYLMDATRV GTLVGSDNFG NRYYENNAYF  60
   61 VPRNRWVEFP DKVWLDYDAT QVPPEWHSWL HHITDDAPSV KPPPTQDWVL EHKENTSIYA 120
  121 DKKYVPYSTT RTKIQGWQPG EKPQFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.920819
Match:	PF05071.7
Description:	No description for PF05071.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.210	N/A	N/A	b.60.1	Lipocalins
View	Download	0.209	N/A	N/A	d.82.2	Frataxin-like
View	Download	0.209	N/A	N/A	d.82.2	Frataxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits