YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUC2_BOVIN
Organism:	Bos taurus
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUC2_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|57102342 - gi\|57102342\|ref\|XP_533999.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1, subcomplex unk...	194.0	[0..1]	[120..1]
NDUC2_MOUSE - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Mus musculus GN=Ndufc2 PE=1 SV=1	193.0	[0..1]	[120..1]
gi\|57164133, gi\|... - gi\|57164133\|ref\|NP_001009290.1\| NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 [Rattus nor...	192.0	[0..1]	[120..1]
gi\|49065322, gi\|... - gi\|7513177\|pir\|\|T08728 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 14.1K chain - human, gi\|4906532... gi\|117644194 - gi\|117644194\|emb\|CAL37591.1\| hypothetical protein [synthetic construct]	185.0	[0..2]	[120..1]
NDUC2_PANTR - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pan troglodytes GN=NDUFC2 PE=3 SV=1	184.0	[0..2]	[120..1]
NDUC2_MACFA - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Macaca fascicularis GN=NDUFC2 PE=3 SV=1	180.0	[0..2]	[120..1]
NDUC2_PONAB - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pongo abelii GN=NDUFC2 PE=3 SV=1 NDUC2_PONPY - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pongo pygmaeus GN=NDUFC2 PE=3 SV=1	158.0	[0..2]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTGRQGRAT FQFLPDEARS LPPPKLTDPR LAFVGFLGYC SGLIDNAIRR RPVLLAGLHR  60
   61 QLLYITSFVF VGYYLLKRQD YMYAVRDHDM FSYIKSHPED FPEKDKKTYG EVFEEFHPVR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.744727
Match:	PF06374.2
Description:	No description for PF06374.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.865	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits