YRC Public Data Repository - Protein Structure Prediction

Protein:	mec-1
Organism:	Caenorhabditis elegans
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mec-1.

Description	E-value	Query Range	Subject Range
gi\|115893463, gi... - gi\|115930648\|ref\|XP_001178590.1\| PREDICTED: similar to fibropellin Ib [Strongylocentrotus purpuratus...	191.0	[0..3]	[254..1616]
gi\|73979526 - gi\|73979526\|ref\|XP_857823.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 3 [Canis familiari...	172.0	[0..2]	[252..581]
gi\|109079674 - gi\|109079674\|ref\|XP_001090578.1\| PREDICTED: similar to odd Oz/ten-m homolog 2 isoform 4 [Macaca mula...	169.0	[0..2]	[252..592]
gi\|51173739 - gi\|51173739\|ref\|NP_989428.2\| odz, odd Oz/ten-m homolog 2 isoform 1 [Gallus gallus]	168.0	[0..2]	[249..620]
gi\|56800394, gi\|... - gi\|56800511\|emb\|CAI35934.1\| odd Oz\/ten-m homolog 2 (Drosophila) [Mus musculus], gi\|56800489\|emb\|CAI...	168.0	[0..2]	[252..592]
gi\|12055236 - gi\|12055236\|emb\|CAC20782.1\| fibrosurfin [Paracentrotus lividus]	167.0	[0..13]	[254..2328]
TEN4_DANRE - Teneurin-4 OS=Danio rerio GN=tenm4 PE=2 SV=1	165.0	[0..2]	[252..653]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLFLLFIPH VIAVKDLAWY SANPVLSSSH LVGPAAIQAA TRIDFCQLPV DTGKCSQQLV  60
   61 RYYYDAAVDE CKRFTFSGCG GNSNRFMRRA HCRNRCVKQP NKPEVQELKH RRTVTSTTST 120
  121 PFQTVNEEST VEPSATKRLP VTLPVKKLEL VQSGHGNGLC QDCDPLYGTC LDGKCGCMKG 180
  181 FRSLGKVCID LNECDNGAVC GPNARCVNEI GSFQCVCDAG FSTDGDCKIG QEACMDEFDV 240
  241 NLTEEDCNNG KQEIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1n7dA
Description:	Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits