YRC Public Data Repository - Protein Structure Prediction

Protein:	MURC_ECOLI
Organism:	Escherichia coli
Length:	491 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MURC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|116183852, gi... - gi\|75854403\|ref\|ZP_00762098.1\| COG0773: UDP-N-acetylmuramate-alanine ligase [Vibrio sp. Ex25], gi\|11...	443.0	[0..2]	[479..5]
MURC_VIBPA - UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221063... gi\|153839043, gi... - gi\|153839043\|ref\|ZP_01991710.1\| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus AQ3810... MURC_VIBPA - UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio parahaemolyticus GN=murC PE=3 SV=1	442.0	[0..2]	[479..5]
gi\|28897235, gi\|... - gi\|28897235\|ref\|NP_796840.1\| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus RIMD 22... gi\|28805444 - gi\|28805444\|dbj\|BAC58724.1\| UDP-N-acetylmuramate-alanine ligase [Vibrio parahaemolyticus RIMD 221063...	441.0	[0..2]	[479..10]
gi\|91228515, gi\|... - gi\|91228515\|ref\|ZP_01262437.1\| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01], ...	440.0	[0..2]	[476..5]
gi\|94425948, gi\|... - gi\|94501895\|ref\|ZP_01308405.1\| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65], gi\|944...	431.0	[0..1]	[490..1]
MURC_BAUCH - UDP-N-acetylmuramate--L-alanine ligase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=...	430.0	[0..1]	[476..1]
MURC_PSEPF - UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain Pf0-1) GN=murC PE=3 SV=1	428.0	[0..10]	[487..6]
tr\|E4RIC0\|E4RIC0... - UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas putida (strain BIRD-1) GN=murC PE=3 SV=1 MURC_PSEPK - UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas putida (strain KT2440) GN=murC PE=3 SV=1	427.0	[0..10]	[488..6]
gi\|89074169, gi\|... - gi\|89074169\|ref\|ZP_01160668.1\| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34], gi...	427.0	[0..1]	[487..4]
gi\|90438531, gi\|... - gi\|90580229\|ref\|ZP_01236036.1\| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14], gi\|9043...	427.0	[0..1]	[487..4]

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Predicted Domain #1

Region A:
Residues: [1-491]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQQLAKLR SIVPEMRRVR HIHFVGIGGA GMGGIAEVLA NEGYQISGSD LAPNPVTQQL  60
   61 MNLGATIYFN HRPENVRDAS VVVVSSAISA DNPEIVAAHE ARIPVIRRAE MLAELMRFRH 120
  121 GIAIAGTHGK TTTTAMVSSI YAEAGLDPTF VNGGLVKAAG VHARLGHGRY LIAEADESDA 180
  181 SFLHLQPMVA IVTNIEADHM DTYQGDFENL KQTFINFLHN LPFYGRAVMC VDDPVIRELL 240
  241 PRVGRQTTTY GFSEDADVRV EDYQQIGPQG HFTLLRQDKE PMRVTLNAPG RHNALNAAAA 300
  301 VAVATEEGID DEAILRALES FQGTGRRFDF LGEFPLEPVN GKSGTAMLVD DYGHHPTEVD 360
  361 ATIKAARAGW PDKNLVMLFQ PHRFTRTRDL YDDFANVLTQ VDTLLMLEVY PAGEAPIPGA 420
  421 DSRSLCRTIR GRGKIDPILV PDPARVAEML APVLTGNDLI LVQGAGNIGK IARSLAEIKL 480
  481 KPQTPEEEQH D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2f00A
Description:	No description for 2f00A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits