YRC Public Data Repository - Protein Structure Prediction

Protein:	LPP_ERWAM
Organism:	Erwinia amylovora
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPP_ERWAM.

Description	E-value	Query Range	Subject Range
LPP_ERWCT - Major outer membrane lipoprotein OS=Erwinia carotovora subsp. atroseptica GN=lpp PE=3 SV=1 gi\|253688819, gi... - gi\|253688819\|ref\|YP_003018009.1\| LPP repeat-containing protein [Pectobacterium carotovorum subsp. ca... gi\|255057139, gi... - gi\|255057139\|ref\|ZP_05309322.1\| LPP repeat-containing protein [Pectobacterium wasabiae WPP163], gi\|2... LPP_PECAS - Major outer membrane lipoprotein OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... gi\|227111740 - gi\|227111740\|ref\|ZP_03825396.1\| major outer membrane lipoprotein [Pectobacterium carotovorum subsp. ... gi\|227329829 - gi\|227329829\|ref\|ZP_03833853.1\| major outer membrane lipoprotein [Pectobacterium carotovorum subsp. ...	117.0	[0..1]	[78..1]
gi\|148508405 - gi\|148508405\|gb\|ABQ76177.1\| Lpp1 [Salmonella enteritidis] gi\|157083162, gi... - gi\|157145957\|ref\|YP_001453276.1\| hypothetical protein CKO_01710 [Citrobacter koseri ATCC BAA-895], g... LPP1_SALTI - Major outer membrane lipoprotein 1 OS=Salmonella typhi GN=lpp1 PE=3 SV=1 LPP1_SALTY - Major outer membrane lipoprotein 1 OS=Salmonella typhimurium GN=lpp1 PE=3 SV=1 gi\|16760531 - gi\|16760531\|ref\|NP_456148.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica s... gi\|161503527, gi... - gi\|161503527\|ref\|YP_001570639.1\| hypothetical protein SARI_01603 [Salmonella enterica subsp. arizona... LPP1_SALTY - Major outer membrane lipoprotein 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G... gi\|29141708, gi\|... - gi\|29141708\|ref\|NP_805050.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=lpp] [protein=murein lipoprotein] [protein_id=YP_005237245.1] [location=complement(1469355..14... gi\|197261732, gi... - gi\|197261732\|ref\|ZP_03161806.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|62127601, gi\|... - gi\|62179968\|ref\|YP_216385.1\| murein lipoprotein, links outer and inner membranes [Salmonella enteric... gi\|197250408, gi... - gi\|197250408\|ref\|YP_002146662.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... LPP1_SALPA - Major outer membrane lipoprotein 1 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lpp1 PE=... gi\|194738115, gi... - gi\|194738115\|ref\|YP_002114392.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|194469147, gi... - gi\|194469147\|ref\|ZP_03075131.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|204927464, gi... - gi\|204927464\|ref\|ZP_03218665.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|199603572, gi... - gi\|200391127\|ref\|ZP_03217738.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|197938789, gi... - gi\|198244273\|ref\|YP_002215750.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|197094051, gi... - gi\|197362574\|ref\|YP_002142211.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|205347540, gi... - gi\|205347540\|gb\|EDZ34171.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|197288016, gi... - gi\|197288016\|gb\|EDY27403.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|168233568, gi... - gi\|205332360\|gb\|EDZ19124.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|205323603, gi... - gi\|205323603\|gb\|EDZ11442.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|283785093\|ref... - major outer membrane lipoprotein (murein-lipoprotein) [Citrobacter rodentium ICC168] gi\|194448101, gi... - gi\|194448101\|ref\|YP_002045383.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|194402017, gi... - gi\|194443354\|ref\|YP_002040632.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|205341349, gi... - gi\|205341349\|gb\|EDZ28113.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|195634397, gi... - gi\|195634397\|gb\|EDX52749.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|224468639, gi... - gi\|224584112\|ref\|YP_002637910.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|214001029 - gi\|214001029\|ref\|ZP_03411764.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... LPP1_SALPA - Major outer membrane lipoprotein 1 OS=Salmonella paratyphi A GN=lpp1 PE=3 SV=1 gi\|213855847 - gi\|213855847\|ref\|ZP_03384087.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|213163075 - gi\|213163075\|ref\|ZP_03348785.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|209907774, gi... - gi\|209907774\|ref\|ZP_03282258.1\| hypothetical protein ENTCAN_02040 [Enterobacter cancerogenus ATCC 35... gi\|238913218 - gi\|238913218\|ref\|ZP_04657055.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|207857117, gi... - gi\|207857117\|ref\|YP_002243768.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|205352904, gi... - gi\|205352904\|ref\|YP_002226705.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... LPP1_SALTI - Major outer membrane lipoprotein 1 OS=Salmonella typhi GN=lpp1 PE=3 SV=1 gi\|213647215 - gi\|213647215\|ref\|ZP_03377268.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... LPP1_SALTY - Major outer membrane lipoprotein 1 OS=Salmonella typhimurium GN=lpp1 PE=3 SV=1 gi\|213623011 - gi\|213623011\|ref\|ZP_03375794.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|213428566 - gi\|213428566\|ref\|ZP_03361316.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|213418181 - gi\|213418181\|ref\|ZP_03351247.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric...	117.0	[0..1]	[78..1]
gi\|62127600, gi\|... - gi\|62179967\|ref\|YP_216384.1\| putative methyl-accepting chemotaxis protein [Salmonella enterica subsp...	115.0	[0..1]	[76..18]
gi\|84779935, gi\|... - gi\|85059415\|ref\|YP_455117.1\| major outer membrane lipoprotein [Sodalis glossinidius str. 'morsitans'...	114.0	[0..1]	[78..1]
EG10544 - murein lipoprotein / Murein lipoprotein; Braun's lipoprotein gi\|227885904, gi... - gi\|227885904\|ref\|ZP_04003709.1\| murein lipoprotein [Escherichia coli 83972], gi\|227837083\|gb\|EEJ4754... gi\|237705623, gi... - gi\|237705623\|ref\|ZP_04536104.1\| major outer membrane lipoprotein [Escherichia sp. 3_2_53FAA], gi\|226... gi\|82777156, gi\|... - gi\|82777156\|ref\|YP_403505.1\| murein lipoprotein [Shigella dysenteriae Sd197], gi\|81241304\|gb\|ABB6201... gi\|238900892, gi... - gi\|238900892\|ref\|YP_002926688.1\| murein lipoprotein [Escherichia coli BW2952], gi\|238861832\|gb\|ACR63... gi\|74311998, gi\|... - gi\|74311998\|ref\|YP_310417.1\| murein lipoprotein [Shigella sonnei Ss046], gi\|73855475\|gb\|AAZ88182.1\| ... gi\|251785131, gi... - gi\|251785131\|ref\|YP_002999435.1\| hypothetical protein B21_01636 [Escherichia coli BL21], gi\|24237740... gi\|75229012 - gi\|75229012\|ref\|ZP_00715599.1\| COG4238: Murein lipoprotein [Escherichia coli B7A] gi\|254288527, gi... - gi\|254288527\|ref\|YP_003054275.1\| murein lipoprotein [Escherichia coli BL21(DE3)], gi\|253977834\|gb\|AC... gi\|157066822, gi... - gi\|75195754\|ref\|ZP_00705824.1\| COG4238: Murein lipoprotein [Escherichia coli HS], gi\|157161142\|ref\|Y... gi\|254161738, gi... - gi\|254161738\|ref\|YP_003044846.1\| murein lipoprotein [Escherichia coli B str. REL606], gi\|253973639\|g... gi\|254793294, gi... - gi\|254793294\|ref\|YP_003078131.1\| murein lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2545... gi\|81245364, gi\|... - gi\|82543953\|ref\|YP_407900.1\| murein lipoprotein [Shigella boydii Sb227], gi\|81245364\|gb\|ABB66072.1\| ... gi\|170682645, gi... - gi\|170682645\|ref\|YP_001743577.1\| major outer membrane lipoprotein [Escherichia coli SMS-3-5], gi\|170... gi\|169889172, gi... - gi\|170081337\|ref\|YP_001730657.1\| murein lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|1... gi\|188495522, gi... - gi\|188495522\|ref\|ZP_03002792.1\| major outer membrane lipoprotein [Escherichia coli 53638], gi\|188490... LPP_SHIFL - Major outer membrane lipoprotein OS=Shigella flexneri GN=lpp PE=3 SV=1 gi\|170122306, gi... - gi\|170768758\|ref\|ZP_02903211.1\| major outer membrane lipoprotein [Escherichia albertii TW07627], gi\|... gi\|24113066, gi\|... - gi\|24113066\|ref\|NP_707576.1\| murein lipoprotein [Shigella flexneri 2a str. 301], gi\|24052039\|gb\|AAN4... gi\|75190715, gi\|... - gi\|75190715\|ref\|ZP_00703982.1\| COG4238: Murein lipoprotein [Escherichia coli E24377A], gi\|157157328\|... gi\|208810697, gi... - gi\|208810697\|ref\|ZP_03252573.1\| major outer membrane lipoprotein [Escherichia coli O157:H7 str. EC42... LPP_ECOL6 - Major outer membrane lipoprotein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=l... gi\|75177429, gi\|... - gi\|75177429\|ref\|ZP_00697518.1\| COG4238: Murein lipoprotein [Shigella boydii BS512], gi\|187732422\|ref... gi\|195937361 - gi\|195937361\|ref\|ZP_03082743.1\| murein lipoprotein [Escherichia coli O157:H7 str. EC4024] gi\|30041443, gi\|... - gi\|30063191\|ref\|NP_837362.1\| murein lipoprotein [Shigella flexneri 2a str. 2457T], gi\|30041443\|gb\|AA... gi\|208740053, gi... - gi\|208819930\|ref\|ZP_03260250.1\| major outer membrane lipoprotein [Escherichia coli O157:H7 str. EC40... LPP_ECO57 - Major outer membrane lipoprotein OS=Escherichia coli O157:H7 GN=lpp PE=3 SV=1 gi\|208731025, gi... - gi\|208816682\|ref\|ZP_03257802.1\| major outer membrane lipoprotein [Escherichia coli O157:H7 str. EC40... EG10544 - murein lipoprotein / Murein lipoprotein; Braun's lipoprotein gi\|1805531, gi\|8... - gi\|89108517\|ref\|AP_002297.1\| murein lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|18055... gi\|12515679, gi\|... - gi\|15802089\|ref\|NP_288111.1\| murein lipoprotein [Escherichia coli O157:H7 EDL933], gi\|12515679\|gb\|AA... gi\|91210890, gi\|... - gi\|91210890\|ref\|YP_540876.1\| murein lipoprotein [Escherichia coli UTI89], gi\|91072464\|gb\|ABE07345.1\|... gi\|15831638, gi\|... - gi\|15831638\|ref\|NP_310411.1\| murein lipoprotein [Escherichia coli O157:H7 str. Sakai], gi\|13361851\|d... gi\|110641798, gi... - gi\|110641798\|ref\|YP_669528.1\| major outer membrane lipoprotein precursor [Escherichia coli 536], gi\|... gi\|170019973, gi... - gi\|170019973\|ref\|YP_001724927.1\| LPP repeat-containing protein [Escherichia coli ATCC 8739], gi\|1697... gi\|218705175, gi... - gi\|218705175\|ref\|YP_002412694.1\| murein lipoprotein [Escherichia coli UMN026], gi\|218432272\|emb\|CAR1... gi\|218699758, gi... - gi\|218699758\|ref\|YP_002407387.1\| murein lipoprotein [Escherichia coli IAI39], gi\|218369744\|emb\|CAR17... LPP_ECOLI, MULI_... - (P02937) Major outer membrane lipoprotein precursor (Murein-lipoprotein), Major outer membrane lipop... gi\|110615202, gi... - gi\|110805654\|ref\|YP_689174.1\| murein lipoprotein [Shigella flexneri 5 str. 8401], gi\|110615202\|gb\|AB... LPP_ECOL6 - Major outer membrane lipoprotein OS=Escherichia coli O6 GN=lpp PE=3 SV=1 gi\|209918991, gi... - gi\|209918991\|ref\|YP_002293075.1\| major outer membrane lipoprotein [Escherichia coli SE11], gi\|209912... gi\|209395893, gi... - gi\|209395893\|ref\|YP_002270746.1\| major outer membrane lipoprotein [Escherichia coli O157:H7 str. EC4... gi\|217328820, gi... - gi\|217328820\|ref\|ZP_03444901.1\| major outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14... gi\|215264924, gi... - gi\|215486852\|ref\|YP_002329283.1\| murein lipoprotein [Escherichia coli O127:H6 str. E2348/69], gi\|215... gi\|218365315, gi... - gi\|218558546\|ref\|YP_002391459.1\| murein lipoprotein [Escherichia coli S88], gi\|218365315\|emb\|CAR0303... gi\|218361011, gi... - gi\|218554243\|ref\|YP_002387156.1\| murein lipoprotein [Escherichia coli IAI1], gi\|218361011\|emb\|CAQ985... gi\|218351970, gi... - gi\|218695238\|ref\|YP_002402905.1\| murein lipoprotein [Escherichia coli 55989], gi\|218351970\|emb\|CAU97... gi\|218689619, gi... - gi\|218689619\|ref\|YP_002397831.1\| murein lipoprotein [Escherichia coli ED1a], gi\|218427183\|emb\|CAR080...	112.0	[0..1]	[78..1]
LPP_PHOLL - Major outer membrane lipoprotein OS=Photorhabdus luminescens subsp. laumondii GN=lpp PE=3 SV=1 LPP_PHOLL - Major outer membrane lipoprotein OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CI...	112.0	[0..1]	[78..1]
gi\|157370426, gi... - gi\|157370426\|ref\|YP_001478415.1\| LPP repeat-containing protein [Serratia proteamaculans 568], gi\|157... gi\|77962192 - gi\|77962192\|ref\|ZP_00826015.1\| COG4238: Murein lipoprotein [Yersinia mollaretii ATCC 43969] gi\|77975292 - gi\|77975292\|ref\|ZP_00830828.1\| COG4238: Murein lipoprotein [Yersinia frederiksenii ATCC 33641] gi\|77979575 - gi\|77979575\|ref\|ZP_00834993.1\| COG4238: Murein lipoprotein [Yersinia intermedia ATCC 29909] tr\|U2NYH1\|U2NYH1... - Major outer membrane lipoprotein OS=Serratia fonticola AU-P3(3) GN=L580_0282 PE=4 SV=1, Major outer ... gi\|123442426, gi... - gi\|123442426\|ref\|YP_001006405.1\| major outer membrane lipoprotein [Yersinia enterocolitica subsp. en... gi\|77959200 - gi\|77959200\|ref\|ZP_00823222.1\| COG4238: Murein lipoprotein [Yersinia bercovieri ATCC 43970]	111.0	[0..1]	[78..1]
gi\|167424979, gi... - gi\|167424979\|ref\|ZP_02316732.1\| major outer membrane lipoprotein [Yersinia pestis biovar Mediaevalis... gi\|167422217, gi... - gi\|167422217\|ref\|ZP_02313970.1\| major outer membrane lipoprotein [Yersinia pestis biovar Orientalis ... gi\|108775658, gi... - gi\|108812010\|ref\|YP_647777.1\| hypothetical protein YPN_1848 [Yersinia pestis Nepal516], gi\|108775658... gi\|166210876, gi... - gi\|166210876\|ref\|ZP_02236911.1\| major outer membrane lipoprotein [Yersinia pestis biovar Antiqua str... gi\|165990389, gi... - gi\|166010687\|ref\|ZP_02231585.1\| major outer membrane lipoprotein [Yersinia pestis biovar Antiqua str... gi\|162419719, gi... - gi\|162419719\|ref\|YP_001606992.1\| major outer membrane lipoprotein [Yersinia pestis Angola], gi\|16235... gi\|45436836, gi\|... - gi\|45441973\|ref\|NP_993512.1\| major outer membrane lipoprotein [Yersinia pestis biovar Microtus str. ...	109.0	[0..1]	[78..4]
gi\|223967 - gi\|223967\|prf\|\|1006243A lipoprotein mutant	109.0	[0..1]	[78..1]
gi\|169750627, gi... - gi\|170024093\|ref\|YP_001720598.1\| LPP repeat-containing protein [Yersinia pseudotuberculosis YPIII], ... gi\|161511370 - gi\|161511370\|ref\|NP_993512.2\| major outer membrane lipoprotein [Yersinia pestis biovar Microtus str.... LPP_YERPS - Major outer membrane lipoprotein OS=Yersinia pseudotuberculosis GN=lpp PE=3 SV=1 gi\|89102005 - gi\|89102005\|ref\|ZP_01174677.1\| COG4238: Murein lipoprotein [Yersinia pestis biovar Orientalis str. I... gi\|108779647, gi... - gi\|108807734\|ref\|YP_651650.1\| major outer membrane lipoprotein [Yersinia pestis Antiqua], gi\|1087796... gi\|186698713, gi... - gi\|186895687\|ref\|YP_001872799.1\| LPP repeat-containing protein [Yersinia pseudotuberculosis PB1/+], ... LPP_YERPE - Major outer membrane lipoprotein OS=Yersinia pestis GN=lpp PE=3 SV=1 gi\|16122617, gi\|... - gi\|218929485\|ref\|YP_002347360.1\| major outer membrane lipoprotein [Yersinia pestis CO92], gi\|1612261... gi\|229837919, gi... - gi\|229837919\|ref\|ZP_04458078.1\| murein lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2], g... LPP_YERPS - Major outer membrane lipoprotein OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=lpp P... gi\|229895080, gi... - gi\|229895080\|ref\|ZP_04510257.1\| murein lipoprotein [Yersinia pestis Pestoides A], gi\|229701968\|gb\|EE... gi\|229902322, gi... - gi\|229902322\|ref\|ZP_04517442.1\| murein lipoprotein [Yersinia pestis Nepal516], gi\|229680657\|gb\|EEO76... gi\|149365695, gi... - gi\|149365695\|ref\|ZP_01887730.1\| major outer membrane lipoprotein [Yersinia pestis CA88-4125], gi\|149... gi\|77629378, gi\|... - gi\|77629378\|ref\|ZP_00791964.1\| COG4238: Murein lipoprotein [Yersinia pseudotuberculosis IP 31758], g...	107.0	[0..1]	[78..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTKLVLGA VILGSTLLAG CSSNAKIDQL STDVQTLNAK VDQLSNDVTA IRSDVQAAKD  60
   61 DAARANQRLD NQAHSYRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1t8zA
Description:	Atomic Structure of A Novel Tryptophan-Zipper Pentamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits