YRC Public Data Repository - Protein Structure Prediction

Protein:	MT3_PRUAV
Organism:	Prunus avium
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT3_PRUAV.

Description	E-value	Query Range	Subject Range
MT3_MALDO - Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1	76.0	[0..1]	[64..1]
gi\|8698921 - gi\|8698921\|gb\|AAF78526.1\|AF195234_1 metallothionein-like protein [Pyrus pyrifolia]	76.0	[0..1]	[64..1]
gi\|225461451, gi... - gi\|7406673\|emb\|CAB85630.1\| putative metallothionein-like protein [Vitis vinifera], gi\|225461453\|ref\|...	76.0	[0..3]	[64..2]
gi\|3378489 - gi\|3378489\|emb\|CAA07565.1\| metallothionein-like protein [Ribes nigrum]	75.0	[0..3]	[64..2]
gi\|29824926 - gi\|29824926\|gb\|AAO92264.1\| metallothionein-like protein [Arachis hypogaea]	74.0	[0..1]	[64..1]
gi\|18958245 - gi\|18958245\|dbj\|BAB85601.1\| metallothionein type 3 [Brassica juncea]	73.0	[0..1]	[64..1]
MT3_MUSAC - Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1 gi\|1213512\|gb\|AA... - metallothionein-like protein [Musa acuminata]	73.0	[0..3]	[64..2]
gi\|76496238 - gi\|76496238\|gb\|ABA43635.1\| metallothionein-like protein [Metroxylon sagu]	73.0	[0..3]	[64..2]
MT3_CARPA - Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1	73.0	[0..1]	[64..1]
gi\|118489949, gi... - gi\|46850189\|gb\|AAT02526.1\| metallothionein 3a [Populus trichocarpa x Populus deltoides], gi\|11848994... gi\|118488217, gi... - gi\|224114924\|ref\|XP_002316894.1\| predicted protein [Populus trichocarpa], gi\|222859959\|gb\|EEE97506.1...	72.0	[0..1]	[56..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKCSNCDC SDSSQCTKKG YSFDLVIVET ENRSMDTVIM DAPAAENGGN CKCGPSCACV  60
   61 DCKC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.823909
Match:	PF01439.9
Description:	No description for PF01439.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.656	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.606	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.587	N/A	N/A	b.34.4	Electron transport accessory proteins
View	Download	0.545	N/A	N/A	b.34.5	Translation proteins SH3-like domain
View	Download	0.539	N/A	N/A	b.34.5	Translation proteins SH3-like domain
View	Download	0.535	N/A	N/A	d.9.1	Interleukin 8-like chemokines
View	Download	0.460	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.434	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.421	N/A	N/A	d.9.1	Interleukin 8-like chemokines
View	Download	0.420	N/A	N/A	d.9.1	Interleukin 8-like chemokines
View	Download	0.407	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.322	N/A	N/A	g.41.17	Description not found.
View	Download	0.225	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.221	N/A	N/A	d.58.7	RNA-binding domain, RBD

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits