YRC Public Data Repository - Protein Structure Prediction

Protein:	MT3_MUSAC
Organism:	Musa acuminata
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT3_MUSAC.

Description	E-value	Query Range	Subject Range
gi\|3378489 - gi\|3378489\|emb\|CAA07565.1\| metallothionein-like protein [Ribes nigrum]	81.0	[0..1]	[65..1]
gi\|225461451, gi... - gi\|7406673\|emb\|CAB85630.1\| putative metallothionein-like protein [Vitis vinifera], gi\|225461453\|ref\|...	80.0	[0..1]	[64..1]
MT3_MALDO - Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1	77.0	[0..3]	[65..4]
gi\|76496238 - gi\|76496238\|gb\|ABA43635.1\| metallothionein-like protein [Metroxylon sagu]	77.0	[0..1]	[64..1]
gi\|8698921 - gi\|8698921\|gb\|AAF78526.1\|AF195234_1 metallothionein-like protein [Pyrus pyrifolia]	76.0	[0..3]	[65..4]
gi\|5731773 - gi\|5731773\|emb\|CAB52585.1\| metallothionein-like protein [Elaeis guineensis]	75.0	[0..1]	[64..1]
gi\|29824926 - gi\|29824926\|gb\|AAO92264.1\| metallothionein-like protein [Arachis hypogaea]	74.0	[0..2]	[65..3]
MT3_CARPA - Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1	73.0	[0..3]	[65..4]
MT3_PRUAV - Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1	71.0	[0..2]	[63..3]
gi\|118489949, gi... - gi\|46850189\|gb\|AAT02526.1\| metallothionein 3a [Populus trichocarpa x Populus deltoides], gi\|11848994... gi\|118488217, gi... - gi\|224114924\|ref\|XP_002316894.1\| predicted protein [Populus trichocarpa], gi\|222859959\|gb\|EEE97506.1...	71.0	[0..2]	[65..3]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTCGNCDCV DKSQCVKKGN SYGIDIVETE KSYVDEVIVA AEAAEHDGKC KCGAACACTD  60
   61 CKCGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.640	b.1.1	Immunoglobulin
View	Download	0.640	b.1.1	Immunoglobulin
View	Download	0.506	d.58.40	D-ribose-5-phosphate isomerase (RpiA), lid domain
View	Download	0.506	d.58.40	D-ribose-5-phosphate isomerase (RpiA), lid domain
View	Download	0.482	d.17.1	Cystatin/monellin
View	Download	0.475	b.84.2	Rudiment single hybrid motif
View	Download	0.475	b.84.2	Rudiment single hybrid motif
View	Download	0.457	d.58.7	RNA-binding domain, RBD
View	Download	0.274	d.58.12	eEF-1beta-like
View	Download	0.272	b.84.2	Rudiment single hybrid motif

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits