YRC Public Data Repository - Protein Structure Prediction

Protein:	MT1_COLLI
Organism:	Columba livia
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT1_COLLI.

Description	E-value	Query Range	Subject Range
gi\|109128677 - gi\|109128677\|ref\|XP_001097779.1\| PREDICTED: hypothetical protein [Macaca mulatta]	73.0	[0..1]	[62..163]
gi\|113426454 - gi\|113426454\|ref\|XP_944705.2\| PREDICTED: similar to Metallothionein-2 (MT-2) (Metallothionein-II) (M...	67.0	[0..5]	[62..123]
gi\|802154, gi\|10... - gi\|802154\|gb\|AAB32777.1\| metallothionein; MT [Carassius auratus], pir\|\|JC2419 metallothionein - gold...	63.0	[0..6]	[61..4]
MTA_ONCMY - Metallothionein A OS=Oncorhynchus mykiss GN=mta PE=3 SV=1 MTA_SALSA - Metallothionein A OS=Salmo salar GN=mta PE=3 SV=1 MTA_SALAL - Metallothionein A OS=Salvelinus alpinus GN=mta PE=3 SV=1 gi\|74419050 - gi\|74419050\|gb\|ABA03253.1\| metallothionein A [Oncorhynchus nerka]	63.0	[0..6]	[61..4]
gi\|78057031 - gi\|78057031\|emb\|CAJ32317.1\| Metallothionein [Phelsuma barbouri]	62.0	[0..1]	[62..1]
gi\|78057027 - gi\|78057027\|emb\|CAJ32315.1\| Metallothionein [Oplurus quadrimaculatus]	61.0	[0..1]	[62..1]
gi\|30421163 - gi\|30421163\|gb\|AAP31403.1\| metallothionein A [Salvelinus alpinus]	61.0	[0..6]	[61..4]

Back

Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQDCPCAA GGTCTCGDNC KCKNCKCTSC KKGCCSCCPA GCAKCAQGCV CKGPPSAKCS  60
   61 CCK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	4mt2A
Description:	COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits