YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPC_BACPF
Organism:	Bacillus pseudofirmus
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPC_BACPF.

Description	E-value	Query Range	Subject Range
gi\|90585842, gi\|... - gi\|90585842\|ref\|ZP_01241548.1\| Multicomponent Na+:H+ antiporter [Staphylococcus aureus subsp. aureus... gi\|110332129 - gi\|110332129\|gb\|ABG67112.1\| MrpC [Staphylococcus aureus] gi\|90583830, gi\|... - gi\|90583830\|ref\|ZP_01239580.1\| Multicomponent Na+:H+ antiporter [Staphylococcus aureus subsp. aureus... gi\|150373832, gi... - gi\|151221032\|ref\|YP_001331854.1\| putative monovalent cation/H+ antiporter subunit C [Staphylococcus ...	122.0	[0..2]	[112..21]
gi\|89100283, gi\|... - gi\|89100283\|ref\|ZP_01173149.1\| hypothetical protein B14911_24666 [Bacillus sp. NRRL B-14911], gi\|890...	116.0	[0..1]	[110..1]
gi\|52081657, gi\|... - gi\|52787042\|ref\|YP_092871.1\| putative monovalent cation/H+ antiporter subunit C [Bacillus lichenifor...	116.0	[0..1]	[110..1]
gi\|77654610, gi\|... - gi\|91975155\|ref\|YP_567814.1\| putative monovalent cation/H+ antiporter subunit C [Rhodopseudomonas pa...	115.0	[0..1]	[109..1]
gi\|78362694, gi\|... - gi\|78484408\|ref\|YP_390333.1\| NADH-ubiquinone oxidoreductase, chain 4L [Thiomicrospira crunogena XCL-...	115.0	[0..1]	[112..1]
gi\|115423079, gi... - gi\|187478493\|ref\|YP_786517.1\| K(+)/H(+) antiporter subunit C (pH adaptation potassium efflux system ...	115.0	[0..1]	[109..1]
gi\|89896924, gi\|... - gi\|89896924\|ref\|YP_520411.1\| putative monovalent cation/H+ antiporter subunit C [Desulfitobacterium ...	113.0	[0..1]	[112..1]
gi\|242234299, gi... - gi\|242242240\|ref\|ZP_04796685.1\| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit C [St... gi\|251806205, gi... - gi\|251810323\|ref\|ZP_04824796.1\| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit C [St... MNHC1_STAES - Na(+)/H(+) antiporter subunit C1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mnhC1 PE=3 SV=... MNHC1_STAEQ - Na(+)/H(+) antiporter subunit C1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mnhC1 ...	113.0	[0..1]	[112..1]
gi\|77953265, gi\|... - gi\|77953265\|ref\|ZP_00817675.1\| multicomponent K+:H+ antiporter subunit C [Marinobacter aquaeolei VT8...	113.0	[0..1]	[108..1]
gi\|68009788, gi\|... - gi\|68054010\|ref\|ZP_00538175.1\| NADH-ubiquinone oxidoreductase, chain 4L [Exiguobacterium sibiricum 2...	112.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILMSITAG VLFMVGTYLI LTKSLLRVVV GLILLSHGAH LLLLTMAGLQ RGAPPLLHLE  60
   61 ATTYSDPLPQ ALILTAIVIS FGVTSFLLVL AYRTYKEHKT DDLDQLRGSA DE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.677781
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.818	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits