YRC Public Data Repository - Protein Structure Prediction

Protein:	MRAY_ECOLI
Organism:	Escherichia coli
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRAY_ECOLI.

Description	E-value	Query Range	Subject Range
MRAY_PECAS - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Pectobacterium atrosepticum (strain SCRI 1043 /... gi\|227113989 - gi\|227113989\|ref\|ZP_03827645.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Pectobacterium ca... MRAY_ERWCT - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Erwinia carotovora subsp. atroseptica GN=mraY P... gi\|227327094 - gi\|227327094\|ref\|ZP_03831118.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Pectobacterium ca...	328.0	[0..1]	[360..1]
MRAY_PHOLL - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photorhabdus luminescens subsp. laumondii (stra... MRAY_PHOLL - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photorhabdus luminescens subsp. laumondii GN=mr...	325.0	[0..1]	[360..1]
gi\|77976103 - gi\|77976103\|ref\|ZP_00831636.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	325.0	[0..1]	[360..1]
MRAY_PHOPR - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photobacterium profundum (strain SS9) GN=mraY P... MRAY_PHOPR - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Photobacterium profundum GN=mraY PE=3 SV=1	325.0	[0..1]	[360..1]
gi\|86148537, gi\|... - gi\|86148537\|ref\|ZP_01066824.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Vibrio sp. MED222]... MRAY_VIBTL - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Vibrio tasmaniensis (strain LGP32) GN=mraY PE=3...	324.0	[0..1]	[360..1]
gi\|90413037, gi\|... - gi\|90413037\|ref\|ZP_01221035.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Photobacterium pro...	324.0	[0..1]	[360..1]
gi\|89050109, gi\|... - gi\|89074173\|ref\|ZP_01160672.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Photobacterium sp....	324.0	[0..1]	[360..1]
gi\|77958238 - gi\|77958238\|ref\|ZP_00822275.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac... gi\|77962095 - gi\|77962095\|ref\|ZP_00825920.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	324.0	[0..1]	[360..1]
gi\|90580225, gi\|... - gi\|90580225\|ref\|ZP_01236032.1\| phospho-N-acetylmuramoyl-pentapeptide-transferase [Vibrio angustum S1...	323.0	[0..1]	[360..1]
MRAY_IDILO - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Idiomarina loihiensis GN=mraY PE=3 SV=1 MRAY_IDILO - Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DS...	323.0	[0..1]	[360..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVWLAEHLV KYYSGFNVFS YLTFRAIVSL LTALFISLWM GPRMIAHLQK LSFGQVVRND  60
   61 GPESHFSKRG TPTMGGIMIL TAIVISVLLW AYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNPYVWCVLV VLVGYGVIGF VDDYRKVVRK DTKGLIARWK YFWMSVIALG VAFALYLAGK  60
   61 DTPATQLVVP FFKDVMPQLG LFYILLAYFV IVGTGNAVNL TDGLDGLAIM PTVFVAGGFA 120
  121 LVAWATGNMN FASYLHIPYL RHAGELVIVC TAIVGAGLGF LWFNTYPAQV FMGDVGSLAL 180
  181 GGALGIIAVL LRQEFLLVIM GGVFVVETLS VILQVGSFKL RGQRIFRMAP IHHHYELKGW 240
  241 PEPRVIVRFW IISLMLVLIG LATLKVR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.366532
Match:	PF00953.12
Description:	No description for PF00953.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits