YRC Public Data Repository - Protein Structure Prediction

Protein:	MOTA_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MOTA_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|37525778, gi\|... - gi\|37525778\|ref\|NP_929122.1\| flagellar motor protein MotA [Photorhabdus luminescens subsp. laumondii...	257.0	[0..1]	[289..1]
gi\|238795649, gi... - gi\|77960502\|ref\|ZP_00824370.1\| COG1291: Flagellar motor component [Yersinia mollaretii ATCC 43969], ...	254.0	[0..1]	[290..1]
gi\|30179962, gi\|... - gi\|30248077\|ref\|NP_840147.1\| flagellar motor protein MotA [Nitrosomonas europaea ATCC 19718], gi\|301...	253.0	[0..1]	[286..1]
gi\|77976912, gi\|... - gi\|77976912\|ref\|ZP_00832378.1\| COG1291: Flagellar motor component [Yersinia intermedia ATCC 29909], ...	253.0	[0..1]	[290..1]
EG10601 - proton conductor component of flagella motor / H+-driven stator protein of flagellar rotation gi\|238863327, gi... - gi\|238901105\|ref\|YP_002926901.1\| proton conductor component of flagella motor [Escherichia coli BW29... gi\|251785338, gi... - gi\|251785338\|ref\|YP_002999642.1\| hypothetical protein B21_01850 [Escherichia coli BL21], gi\|24237761... gi\|253324197, gi... - gi\|254288738\|ref\|YP_003054486.1\| flagellar motor protein MotA [Escherichia coli BL21(DE3)], gi\|25397... gi\|253973851, gi... - gi\|254161950\|ref\|YP_003045058.1\| flagellar motor protein MotA [Escherichia coli B str. REL606], gi\|2... gi\|1736549, gi\|8... - gi\|89108730\|ref\|AP_002510.1\| proton conductor component of flagella motor [Escherichia coli str. K-1... gi\|188495499, gi... - gi\|75513037\|ref\|ZP_00735499.1\| COG1291: Flagellar motor component [Escherichia coli 53638], gi\|18849... gi\|169754693, gi... - gi\|170019765\|ref\|YP_001724719.1\| flagellar motor protein MotA [Escherichia coli ATCC 8739], gi\|16975... gi\|75235306, gi\|... - gi\|75235306\|ref\|ZP_00719532.1\| COG1291: Flagellar motor component [Escherichia coli E110019], gi\|193... gi\|157067042, gi... - gi\|75195954\|ref\|ZP_00706024.1\| COG1291: Flagellar motor component [Escherichia coli HS], gi\|15716136... gi\|218361246, gi... - gi\|218554478\|ref\|YP_002387391.1\| flagellar motor protein MotA [Escherichia coli IAI1], gi\|218361246\|... gi\|169889380, gi... - gi\|170081545\|ref\|YP_001730865.1\| proton conductor component of flagella motor [Escherichia coli str.... MOTA_ECOLI - Chemotaxis protein motA (Motility protein A) - Escherichia coli gi\|218352188, gi... - gi\|218695456\|ref\|YP_002403123.1\| flagellar motor protein MotA [Escherichia coli 55989], gi\|218352188... EG10601 - proton conductor component of flagella motor / H+-driven stator protein of flagellar rotation gi\|124531096, gi... - gi\|124531096\|ref\|ZP_01701481.1\| proton conductor component of flagella motor [Escherichia coli B], g...	252.0	[0..1]	[289..1]
gi\|17431884 - gi\|17431884\|emb\|CAD18562.1\| probable chemotaxis (motility protein a) transmembrane [Ralstonia solana... gi\|17549630 - gi\|17549630\|ref\|NP_522970.1\| flagellar motor protein MotA [Ralstonia solanacearum GMI1000] gi\|83725780, gi\|... - gi\|83747600\|ref\|ZP_00944637.1\| Probable chemotaxis motA protein [Ralstonia solanacearum UW551], gi\|8... gi\|207725017, gi... - gi\|207725017\|ref\|YP_002255414.1\| chemotaxis protein (motility protein a) [Ralstonia solanacearum Mol... gi\|207738643, gi... - gi\|207738643\|ref\|YP_002257036.1\| chemotaxis protein (motility protein a) [Ralstonia solanacearum IPO...	252.0	[0..1]	[286..1]
gi\|26108561, gi\|... - gi\|26248157\|ref\|NP_754197.1\| flagellar motor protein MotA [Escherichia coli CFT073], gi\|26108561\|gb\|...	252.0	[0..1]	[289..1]
gi\|218427450, gi... - gi\|218689886\|ref\|YP_002398098.1\| flagellar motor protein MotA [Escherichia coli ED1a], gi\|218427450\|... gi\|237705848, gi... - gi\|237705848\|ref\|ZP_04536329.1\| flagellar motor protein MotA [Escherichia sp. 3_2_53FAA], gi\|2269006... gi\|227885681, gi... - gi\|227885681\|ref\|ZP_04003486.1\| flagellar motor protein MotA [Escherichia coli 83972], gi\|227837254\|... gi\|91072688, gi\|... - gi\|91211114\|ref\|YP_541100.1\| flagellar motor protein MotA [Escherichia coli UTI89], gi\|91072688\|gb\|A... gi\|117624040, gi... - gi\|117624040\|ref\|YP_852953.1\| flagellar motor protein MotA [Escherichia coli APEC O1], gi\|115513164\|... gi\|215265173, gi... - gi\|215487101\|ref\|YP_002329532.1\| flagellar motor protein MotA [Escherichia coli O127:H6 str. E2348/6... gi\|218365522, gi... - gi\|218558753\|ref\|YP_002391666.1\| flagellar motor protein MotA [Escherichia coli S88], gi\|218365522\|e...	252.0	[0..1]	[289..1]
gi\|62128133, gi\|... - gi\|62180500\|ref\|YP_216917.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|56127415, gi\|... - gi\|56413158\|ref\|YP_150233.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|161613517, gi... - gi\|161613517\|ref\|YP_001587482.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|167552437, gi... - gi\|205322878\|gb\|EDZ10717.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sai... gi\|205327857, gi... - gi\|205327857\|gb\|EDZ14621.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar 4,[... gi\|205331990, gi... - gi\|205331990\|gb\|EDZ18754.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Ken... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium GN=motA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=motA] [protein=flagellar motor protein MotA] [protein_id=YP_005237891.1] [location=complement(... gi\|200389572, gi... - gi\|200389572\|ref\|ZP_03216183.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|204931070, gi... - gi\|204931070\|ref\|ZP_03221896.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|224468100, gi... - gi\|224583573\|ref\|YP_002637371.1\| flagellar motor protein [Salmonella enterica subsp. enterica serova... MOTA_SALTY - Chemotaxis protein motA OS=Salmonella typhimurium GN=motA PE=3 SV=1 gi\|194735541, gi... - gi\|194735541\|ref\|YP_002114960.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197248635, gi... - gi\|197248635\|ref\|YP_002146097.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197244243, gi... - gi\|197265988\|ref\|ZP_03166062.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197937986, gi... - gi\|198243470\|ref\|YP_002215159.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|205342756, gi... - gi\|205342756\|gb\|EDZ29520.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Wel... gi\|194444912, gi... - gi\|194444912\|ref\|YP_002041190.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|194408818, gi... - gi\|194450514\|ref\|YP_002045978.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|194468783, gi... - gi\|194468783\|ref\|ZP_03074767.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197288649, gi... - gi\|197288649\|gb\|EDY28024.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sch... gi\|238912500 - gi\|238912500\|ref\|ZP_04656337.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|168241556, gi... - gi\|205339404\|gb\|EDZ26168.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Hei... gi\|205350824, gi... - gi\|205350824\|gb\|EDZ37455.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Had... gi\|195634498, gi... - gi\|195634498\|gb\|EDX52850.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar New... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=motA PE=3 SV=1	252.0	[0..1]	[289..1]
gi\|170518770, gi... - gi\|170681052\|ref\|YP_001743352.1\| chemotaxis protein MotA [Escherichia coli SMS-3-5], gi\|170518770\|gb... gi\|194417673, gi... - gi\|194434129\|ref\|ZP_03066398.1\| chemotaxis protein MotA [Shigella dysenteriae 1012], gi\|194417673\|gb... gi\|209912575, gi... - gi\|209919316\|ref\|YP_002293400.1\| flagellar motor protein MotA [Escherichia coli SE11], gi\|209912575\|... gi\|191168080, gi... - gi\|75228729\|ref\|ZP_00715342.1\| COG1291: Flagellar motor component [Escherichia coli B7A], gi\|1911680... gi\|75209433, gi\|... - gi\|75209433\|ref\|ZP_00709661.1\| COG1291: Flagellar motor component [Escherichia coli B171], gi\|194429... gi\|157156438, gi... - gi\|75190918\|ref\|ZP_00704185.1\| COG1291: Flagellar motor component [Escherichia coli E24377A], gi\|157...	252.0	[0..1]	[289..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVIGLIIT FGCIIGGYMA MGGHLNVLVQ PFELMIIGGA GLGGFIMANP MKVVKDSGKA  60
   61 LGEAFKHS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPKERNYLDV LGVLYSLMRD LRTKSRNEIE AHIDNPEESS IFQSAPSVLK NKELTSFICD  60
   61 YVRLIIIGNA RSHEIEALMD EEIETILHDK LKPYHAITTM GDSFPAIGIV AAVLGVIKAM 120
  121 GKINESPEVL GGLIGAALVG TMLGIILSYS ICNPLASQVK IVRTKQHRLY IIVKQTLIAY 180
  181 MNGSVPQVAL EYGRKTISNY ERPSIDAVEQ EMMNPGGENK AA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits