YRC Public Data Repository - Protein Structure Prediction

Protein:	KCNE1_RABIT
Organism:	Oryctolagus cuniculus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCNE1_RABIT.

Description	E-value	Query Range	Subject Range
gi\|74001418 - gi\|74001418\|ref\|XP_544868.2\| PREDICTED: similar to Potassium voltage-gated channel subfamily E membe...	221.0	[0..1]	[128..265]
gi\|114683988 - gi\|114683988\|ref\|XP_001167449.1\| PREDICTED: similar to Potassium voltage-gated channel subfamily E m...	214.0	[0..1]	[129..22]
KCNE1_FELCA - Potassium voltage-gated channel subfamily E member 1 OS=Felis catus GN=KCNE1 PE=2 SV=1	212.0	[0..1]	[128..1]
gi\|60834886 - gi\|60834886\|gb\|AAX37115.1\| potassium voltage-gated channel Isk-related family member 1 [synthetic co...	210.0	[0..1]	[129..1]
gi\|208967108 - gi\|208967108\|dbj\|BAG73568.1\| potassium voltage-gated channel, Isk-related family, member 1 [syntheti... gi\|16151155 - gi\|16151155\|gb\|AAL13162.1\| potassium voltage-gated channel ISK-related family member 1 [Cavia porcel... gi\|49456471, gi\|... - gi\|603451\|gb\|AAA63905.1\| delayed rectifier potassium channel, gi\|55777836\|gb\|AAH46224.1\| Potassium v...	209.0	[0..1]	[129..1]
KCNE1_CAVPO - Potassium voltage-gated channel subfamily E member 1 OS=Cavia porcellus GN=KCNE1 PE=2 SV=1	209.0	[0..1]	[126..1]
KCNE1_PONAB - Potassium voltage-gated channel subfamily E member 1 OS=Pongo abelii GN=KCNE1 PE=2 SV=1 KCNE1_PONPY - Potassium voltage-gated channel subfamily E member 1 - Pongo pygmaeus (Orangutan)	207.0	[0..1]	[129..1]
gi\|61839629, gi\|... - gi\|86438242\|gb\|AAI12874.1\| Potassium voltage-gated channel, Isk-related family, member 1 [Bos taurus...	207.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPPNATAVM PFLTTLGEET AHLQGSSATS LARRGPLGDD GQMEALYILM VLGFFGFFTL  60
   61 GIMLSYIRSQ KLEHSHDPFN VYIEANDWQE KDRAYFQARV LESCRGCYVL ENQLAVEHPD 120
  121 THLPELKPSL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	99.420216
Match:	PF02060.6
Description:	No description for PF02060.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.845	N/A	N/A	a.47.1	STAT
View	Download	0.819	N/A	N/A	f.56.1	Description not found.
View	Download	0.786	N/A	N/A	a.7.8	GAT domain
View	Download	0.777	N/A	N/A	a.47.1	STAT
View	Download	0.661	N/A	N/A	f.17.2	Cytochrome c oxidase subunit II-like, transmembrane region
View	Download	0.636	N/A	N/A	f.56.1	Description not found.
View	Download	0.592	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.543	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.492	N/A	N/A	a.7.4	Smac/diablo
View	Download	0.466	N/A	N/A	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits