YRC Public Data Repository - Protein Structure Prediction

Protein:	KCNE1_PIG
Organism:	Sus scrofa
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCNE1_PIG.

Description	E-value	Query Range	Subject Range
gi\|74001418 - gi\|74001418\|ref\|XP_544868.2\| PREDICTED: similar to Potassium voltage-gated channel subfamily E membe...	225.0	[0..1]	[130..265]
KCNE1_FELCA - Potassium voltage-gated channel subfamily E member 1 OS=Felis catus GN=KCNE1 PE=2 SV=1	218.0	[0..1]	[130..1]
gi\|114683998, gi... - gi\|114684000\|ref\|XP_001167612.1\| PREDICTED: potassium voltage-gated channel, Isk-related family, mem...	217.0	[0..1]	[128..1]
gi\|208835 - gi\|208835\|gb\|AAA73027.1\| voltage-dependent K+-selective ion channel KCNE1_RAT - Potassium voltage-gated channel subfamily E member 1 OS=Rattus norvegicus GN=Kcne1 PE=1 SV=1	216.0	[0..1]	[130..1]
gi\|60834886 - gi\|60834886\|gb\|AAX37115.1\| potassium voltage-gated channel Isk-related family member 1 [synthetic co...	213.0	[0..1]	[128..1]
KCNE1_PONAB - Potassium voltage-gated channel subfamily E member 1 OS=Pongo abelii GN=KCNE1 PE=2 SV=1 KCNE1_PONPY - Potassium voltage-gated channel subfamily E member 1 - Pongo pygmaeus (Orangutan)	212.0	[0..1]	[128..1]
gi\|208967108 - gi\|208967108\|dbj\|BAG73568.1\| potassium voltage-gated channel, Isk-related family, member 1 [syntheti... gi\|16151155 - gi\|16151155\|gb\|AAL13162.1\| potassium voltage-gated channel ISK-related family member 1 [Cavia porcel... gi\|49456471, gi\|... - gi\|603451\|gb\|AAA63905.1\| delayed rectifier potassium channel, gi\|55777836\|gb\|AAH46224.1\| Potassium v...	212.0	[0..1]	[128..1]
KCNE1_MOUSE - Potassium voltage-gated channel subfamily E member 1 OS=Mus musculus GN=Kcne1 PE=1 SV=1	211.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSNSTTVL PFLASLWQET DEPGGNMSAD LARRSQLRDD SKLEALYILM VLGFFGFFTL  60
   61 GIMLSYIRSK KLEHSHDPFN VYIESDAWQE KGKALFQARV LESFRACYAI ENQAAVEQPA 120
  121 THLPELKPLS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	94.408935
Match:	PF02060.6
Description:	No description for PF02060.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.775	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.775	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.764	N/A	N/A	a.2.17	Description not found.
View	Download	0.747	N/A	N/A	a.246.1	Description not found.
View	Download	0.592	N/A	N/A	f.18.1	F1F0 ATP synthase subunit A
View	Download	0.592	N/A	N/A	f.18.1	F1F0 ATP synthase subunit A
View	Download	0.587	N/A	N/A	a.30.2	Homodimeric domain of signal transducing histidine kinase
View	Download	0.582	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.568	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.439	N/A	N/A	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits