YRC Public Data Repository - Protein Structure Prediction

Protein:	KCNE1_CAVPO
Organism:	Cavia porcellus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCNE1_CAVPO.

Description	E-value	Query Range	Subject Range
KCNE1_FELCA - Potassium voltage-gated channel subfamily E member 1 OS=Felis catus GN=KCNE1 PE=2 SV=1	211.0	[0..1]	[125..1]
gi\|114683998, gi... - gi\|114684000\|ref\|XP_001167612.1\| PREDICTED: potassium voltage-gated channel, Isk-related family, mem...	210.0	[0..1]	[125..1]
gi\|74001418 - gi\|74001418\|ref\|XP_544868.2\| PREDICTED: similar to Potassium voltage-gated channel subfamily E membe...	209.0	[0..1]	[125..265]
gi\|61839629, gi\|... - gi\|86438242\|gb\|AAI12874.1\| Potassium voltage-gated channel, Isk-related family, member 1 [Bos taurus...	208.0	[0..1]	[125..1]
gi\|543475 - pir\|\|A49392 min K potassium channel, gpIsK - guinea pig gi\|455861 - gi\|455861\|gb\|AAB29271.1\| min K potassium channel, gpIsK [guinea pigs, heart, Peptide, 125 aa]	208.0	[0..1]	[125..1]
gi\|60834886 - gi\|60834886\|gb\|AAX37115.1\| potassium voltage-gated channel Isk-related family member 1 [synthetic co...	207.0	[0..1]	[124..1]
gi\|208967108 - gi\|208967108\|dbj\|BAG73568.1\| potassium voltage-gated channel, Isk-related family, member 1 [syntheti... gi\|16151155 - gi\|16151155\|gb\|AAL13162.1\| potassium voltage-gated channel ISK-related family member 1 [Cavia porcel... gi\|49456471, gi\|... - gi\|603451\|gb\|AAA63905.1\| delayed rectifier potassium channel, gi\|55777836\|gb\|AAH46224.1\| Potassium v...	206.0	[0..1]	[124..1]
KCNE1_PONAB - Potassium voltage-gated channel subfamily E member 1 OS=Pongo abelii GN=KCNE1 PE=2 SV=1 KCNE1_PONPY - Potassium voltage-gated channel subfamily E member 1 - Pongo pygmaeus (Orangutan)	206.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILPNSTAVM PFLTTVWQGT VQPSSNASGL ARRSPLRDDG KLEALYILMV LGFFGFFTLG  60
   61 IMLSYIRSKK LEHSHDPFNV YIESDTWQEK DKAFFQARVL ENCRSCCVIE NQLTVEQPNT 120
  121 YLPEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	85.346787
Match:	PF02060.6
Description:	No description for PF02060.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits