YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145361444
Organism:	Arabidopsis thaliana
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145361444.

Description	E-value	Query Range	Subject Range
gi\|222424480, gi... - gi\|9454568\|gb\|AAF87891.1\|AC015447_1 Hypothetical protein [Arabidopsis thaliana], gi\|42571571\|ref\|NP_...	163.0	[0..1]	[225..1]
gi\|62901916 - gi\|62901916\|gb\|AAY18909.1\| thioredoxin peroxidase 1-like [synthetic construct]	159.0	[0..63]	[225..25]
gi\|19698783 - gi\|19698783\|gb\|AAL91102.1\| thiredoxin peroxidase [Acanthocheilonema viteae]	159.0	[0..62]	[225..2]
gi\|149037815, gi... - gi\|34849738\|gb\|AAH58481.1\| Peroxiredoxin 2 [Rattus norvegicus], gi\|149037815\|gb\|EDL92175.1\| rCG51106...	158.0	[0..64]	[225..2]
gi\|114633015 - gi\|114633015\|ref\|XP_001154193.1\| PREDICTED: peroxiredoxin 3 isoform 3 [Pan troglodytes] gi\|61356647 - gi\|61356647\|gb\|AAX41269.1\| peroxiredoxin 3 [synthetic construct] PRDX3 - peroxiredoxin 3	158.0	[0..12]	[225..2]
PRDX2_CRIGR - Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3	158.0	[0..64]	[225..2]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTVVTTV THGASSILPS RTALAVSSRR FSSFSPSRLD FSNLRRRVNA PSPRRLVVRA  60
   61 ARTESAGVKL GARAPNFELP EPLTGNLWKL EDFELYPSLL KGLAVVAISS NSVVTHPQDG 120
  121 PEFMAEDAKV FKYPFPYLYD ESQEVAREFG AVCTPEFFLY KKDGRRPFEL VYHGQFDDSR 180
  181 PSSNSPVTGR DLSLAIDLSL SCQPIPSNQK PSVGCSIKWH PETKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	2ywiA
Description:	No description for 2ywiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits