YRC Public Data Repository - Protein Structure Prediction

Protein:	him-4
Organism:	Caenorhabditis elegans
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for him-4.

Description	E-value	Query Range	Subject Range
gi\|109498009 - gi\|109498009\|ref\|XP_222716.4\| PREDICTED: similar to hemicentin 1 [Rattus norvegicus]	197.0	[0..1]	[197..5097]
gi\|73961211 - gi\|73961211\|ref\|XP_547438.2\| PREDICTED: similar to High Incidence of Males (increased X chromosome l...	195.0	[0..1]	[197..5100]
gi\|114568425 - gi\|114568425\|ref\|XP_514061.2\| PREDICTED: hemicentin 1 [Pan troglodytes]	194.0	[0..1]	[197..5098]
gi\|55962332 - gi\|55962332\|emb\|CAI11663.1\| novel hemicentin protein [Danio rerio]	194.0	[0..1]	[198..4992]
gi\|31083306 - gi\|31083306\|ref\|NP_114141.1\| hemicentin 1 [Homo sapiens]	193.0	[0..1]	[197..5099]
gi\|124486855, gi... - gi\|82917259\|ref\|XP_890829.1\| PREDICTED: fat tumor suppressor homolog isoform 1 [Mus musculus], gi\|82...	172.0	[0..12]	[168..4001]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPHTRICED LDECAFYQPC DFECINYDGG FQCNCPLGYE LAEEGCRDVN ECESVRCEDG  60
   61 KACFNQLGGY ECIDDPCPAN YSLVDDRYCE PECENCTSTP IQVHMLAIPS GLPISHIATL 120
  121 TAYDKSGRVL NDTTYAISDT GAPLARGRMT SGPFTIKAVK RGHAQVWTNR VLAAGDHHKV 180
  181 RVRAHSDHAT NELHAPKETN FLVLINVGQY PF

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Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1jv2B
Description:	Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits