YRC Public Data Repository - Protein Structure Prediction

Protein:	MASZ_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	725 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MASZ_PSEAE.

Description	E-value	Query Range	Subject Range
MASZ_PSEA8 - Malate synthase G OS=Pseudomonas aeruginosa (strain LESB58) GN=glcB PE=3 SV=1 gi\|107099468 - gi\|107099468\|ref\|ZP_01363386.1\| hypothetical protein PaerPA_01000480 [Pseudomonas aeruginosa PACS2] MASZ_PSEAB - Malate synthase G OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=glcB PE=3 SV=1	0.0	[1..725]	[1..725]
MASZ_PSEA7 - Malate synthase G OS=Pseudomonas aeruginosa (strain PA7) GN=glcB PE=3 SV=1	0.0	[1..725]	[1..725]
MASZ_PSEPF - Malate synthase G OS=Pseudomonas fluorescens (strain Pf0-1) GN=glcB PE=3 SV=1	0.0	[1..725]	[1..725]
gi\|83644497, gi\|... - gi\|83644497\|ref\|YP_432932.1\| malate synthase G [Hahella chejuensis KCTC 2396], gi\|83632540\|gb\|ABC285...	0.0	[1..724]	[34..756]
gi\|77866917, gi\|... - gi\|77954162\|ref\|ZP_00818561.1\| Malate synthase G [Marinobacter aquaeolei VT8], gi\|77866917\|gb\|EAO982...	0.0	[1..724]	[29..753]
MASZ_PSEPK - Malate synthase G OS=Pseudomonas putida (strain KT2440) GN=glcB PE=3 SV=1	0.0	[1..725]	[1..725]
MASZ_PSEFL - Malate synthase G OS=Pseudomonas fluorescens GN=glcB PE=3 SV=1	0.0	[1..725]	[1..725]
gi\|67157443, gi\|... - gi\|67157443\|ref\|ZP_00418692.1\| Malate synthase G [Azotobacter vinelandii AvOP], ref\|ZP_00089192.1\| C... gi\|226942747, gi... - gi\|67157443\|ref\|ZP_00418692.1\| Malate synthase G [Azotobacter vinelandii AvOP], gi\|67085351\|gb\|EAM04...	0.0	[1..725]	[1..724]
gi\|71556989, gi\|... - gi\|71736436\|ref\|YP_276835.1\| malate synthase G [Pseudomonas syringae pv. phaseolicola 1448A], gi\|715...	0.0	[1..725]	[1..725]
gi\|82714063, gi\|... - gi\|82738889\|ref\|ZP_00901711.1\| Malate synthase G [Pseudomonas putida F1], gi\|82714063\|gb\|EAP49155.1\|... tr\|I7AZA9\|I7AZA9... - Malate synthase G OS=Pseudomonas putida (strain DOT-T1E) GN=glcB PE=3 SV=1	0.0	[1..725]	[1..725]

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Predicted Domain #1

Region A:
Residues: [1-725]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTERVQVGGL QVAKVLFDFV NNEAIPGTGV SADTFWTGAE AVINDLAPKN KALLAKRDEL  60
   61 QAKIDGWHQA RAGQAHDAVA YKAFLEEIGY LLPEAEDFQA GTQNVDDEIA RMAGPQLVVP 120
  121 VMNARFALNA SNARWGSLYD ALYGTDVISE EGGAEKGKGY NKVRGDKVIA FARAFLDEAA 180
  181 PLESGSHVDA TSYSVKNGAL VVALKNGSET GLKNAGQFLA FQGDAAKPQA VLLKHNGLHF 240
  241 EIQIDPSSPV GQTDAAGVKD VLMEAALTTI MDCEDSVAAV DADDKVVIYR NWLGLMKGDL 300
  301 AEEVSKGGST FTRTMNPDRV YTRADGSELT LHGRSLLFVR NVGHLMTNDA ILDKDGNEVP 360
  361 EGIQDGLFTS LIAIHDLNGN TSRKNSRTGS VYIVKPKMHG PEEAAFTNEL FGRVEDVLGL 420
  421 PRNTLKVGIM DEERRTTVNL KACIKAAKDR VVFINTGFLD RTGDEIHTSM EAGAVVRKGA 480
  481 MKSEKWIGAY ENNNVDVGLA TGLQGKAQIG KGMWAMPDLM AAMLEQKIGH PLAGANTAWV 540
  541 PSPTAATLHA LHYHKVDVFA RQAELAKRTP ASVDDILTIP LAPNTNWTAE EIKNEVDNNA 600
  601 QGILGYVVRW IDQGVGCSKV PDINDVGLME DRATLRISSQ LLANWLRHGV ISQEQVVESL 660
  661 KRMAVVVDRQ NASDPSYRPM APNFDDNVAF QAALELVVEG TRQPNGYTEP VLHRRRREFK 720
  721 AKNGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2gq3A
Description:	No description for 2gq3A was found.

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	3.42741832724053	bayes_pls_golite062009
malate synthase activity	3.30693406844099	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.77690715624512	bayes_pls_golite062009
catalytic activity	1.60678631669946	bayes_pls_golite062009
transferase activity	0.46418608399558	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: