YRC Public Data Repository - Protein Structure Prediction

Protein:	MAFF_CHICK
Organism:	Gallus gallus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAFF_CHICK.

Description	E-value	Query Range	Subject Range
gi\|76654393 - gi\|76654393\|ref\|XP_876322.1\| PREDICTED: similar to Transcription factor MafK (Erythroid transcriptio...	112.0	[0..9]	[149..153]
NF2L1_CHICK - Nuclear factor erythroid 2-related factor 1 OS=Gallus gallus GN=NFE2L1 PE=2 SV=1	104.0	[0..1]	[147..611]
gi\|73966226 - gi\|73966226\|ref\|XP_864643.1\| PREDICTED: similar to nuclear factor, erythroid derived 2,-like 1 isofo...	102.0	[0..1]	[147..563]
gi\|21748606 - gi\|21748606\|dbj\|BAC03440.1\| FLJ00380 protein [Homo sapiens]	102.0	[0..1]	[147..630]
gi\|89514867 - gi\|89514867\|gb\|ABD75308.1\| class III homeodomain-leucine zipper protein C3HDZ3 [Ginkgo biloba]	102.0	[0..7]	[149..13]
gi\|109114149, gi... - gi\|109114149\|ref\|XP_001087315.1\| PREDICTED: nuclear factor (erythroid-derived 2)-like 1 isoform 14 [...	102.0	[0..1]	[147..581]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADGLSSKA LKVKRELGEN TPLLSDEELM GLSVRELNHH LRGLSKEEVA RLKQRRRTLK  60
   61 NRGYAASCRV KRVCQKEELQ KQKMELEWEV DKLARENAAM RLELDTLRGK YEALQGFART 120
  121 VAAHGPPAKV ATASVITIVK SGANQAAYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits