YRC Public Data Repository - Protein Structure Prediction

Protein:	LYNX1_MACMU, LYN...
Organism:	Macaca mulatta
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYNX1_MACMU, LYN....

Description	E-value	Query Range	Subject Range
gi\|109482296, gi... - gi\|27662050\|ref\|XP_216965.1\| PREDICTED: similar to Ly-6/neurotoxin-like protein 1 precursor (GC26) [... LYNX_MOUSE, LYNX... - (Q9WVC2) Ly-6/neurotoxin-like protein 1 precursor (GC26), Ly-6/neurotoxin-like protein 1 OS=Mus musc...	117.0	[0..1]	[118..1]
LYNX1_PANTR - Ly-6/neurotoxin-like protein 1 OS=Pan troglodytes GN=LYNX1 PE=3 SV=1	107.0	[0..1]	[118..1]
LYNX1 - Ly6/neurotoxin 1	105.0	[0..1]	[118..1]
gi\|50731914 - gi\|50731914\|ref\|XP_418414.1\| PREDICTED: similar to prostate stem cell antigen [Gallus gallus]	100.0	[0..1]	[118..273]
LYNX1_SAIBB - Ly-6/neurotoxin-like protein 1 OS=Saimiri boliviensis boliviensis GN=LYNX1 PE=3 SV=1 gi\|56122256 - gi\|56122256\|gb\|AAV74279.1\| Ly6/neurotoxin-1 [Saimiri boliviensis]	98.0	[0..1]	[118..1]
gi\|109482422 - gi\|109482422\|ref\|XP_001073983.1\| PREDICTED: similar to Ly6-B antigen gene [Rattus norvegicus]	97.0	[0..14]	[118..3]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLLTLFLV VLMGLPLAPV QALDCHVCAY NGDNCFNPMR CPAMVAYCMT TRTYYTPTRM  60
   61 KVSKSCVPSC FETVYDGYSK HASTTSCCQY DLCNSASLAI PATLALAPVL LATLWGLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	2j8bA
Description:	No description for 2j8bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits