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View Structure Prediction Details

Protein: LYNX1
Organism: Homo sapiens
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYNX1.

Description E-value Query
Range
Subject
Range
LY6I_MOUSE - Lymphocyte antigen 6I OS=Mus musculus GN=Ly6i PE=2 SV=1
6.0E-37 [1..116] [7..129]
gi|189339280, gi... - ref|XP_343264.1| similar to Ly6-B antigen gene [Rattus norvegicus], gi|189339280|ref|NP_001121571.1|...
7.0E-33 [1..116] [7..130]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLLTLILV VLMGLPLAQA LDCHVCAYNG DNCFNPMRCP AMVAYCMTTR TYYTPTRMKV  60
   61 SKSCVPRCFE TVYDGYSKHA STTSCCQYDL CNGTGLATPA TLALAPILLA TLWGLL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.1
Match: 1rewC
Description: Structural refinement of the complex of bone morphogenetic protein 2 and its type IA receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
signal transducer activity 1.79909561917824 bayes_pls_golite062009
molecular transducer activity 1.79909561917824 bayes_pls_golite062009
binding 1.52242458734052 bayes_pls_golite062009
receptor activity 1.15368277805736 bayes_pls_golite062009
protein binding 1.13333989498989 bayes_pls_golite062009
receptor binding 0.293497216160518 bayes_pls_golite062009

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