YRC Public Data Repository - Protein Structure Prediction

Protein:	LRGA_BACCR
Organism:	Bacillus cereus ATCC 14579
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRGA_BACCR.

Description	E-value	Query Range	Subject Range
gi\|42784617, gi\|... - gi\|42784617\|ref\|NP_981864.1\| murein hydrolase regulator LrgA [Bacillus cereus ATCC 10987], gi\|427405...	134.0	[0..1]	[146..25]
gi\|75761698, gi\|... - gi\|75761698\|ref\|ZP_00741642.1\| Murein hydrolase exporter [Bacillus thuringiensis serovar israelensis...	132.0	[0..1]	[146..25]
gi\|65317421 - gi\|65317421\|ref\|ZP_00390380.1\| COG1380: Putative effector of murein hydrolase LrgA [Bacillus anthrac...	131.0	[0..1]	[146..25]
LRGA_BACAC - Antiholin-like protein LrgA OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=lrgA PE=3 SV=1 LRGA_BACC3 - Antiholin-like protein LrgA OS=Bacillus cereus (strain 03BB102) GN=lrgA PE=3 SV=1 gi\|228810507, gi... - gi\|228949162\|ref\|ZP_04111431.1\| Antiholin-like protein lrgA [Bacillus thuringiensis serovar monterre... gi\|228835476, gi... - gi\|228924184\|ref\|ZP_04087459.1\| Antiholin-like protein lrgA [Bacillus thuringiensis serovar huazhong... gi\|228968574, gi... - gi\|228968574\|ref\|ZP_04129560.1\| Antiholin-like protein lrgA [Bacillus thuringiensis serovar sotto st... gi\|228955689, gi... - gi\|228955689\|ref\|ZP_04117687.1\| Antiholin-like protein lrgA [Bacillus thuringiensis serovar kurstaki... gi\|228710248, gi... - gi\|229072905\|ref\|ZP_04206103.1\| Antiholin-like protein lrgA [Bacillus cereus F65185], gi\|228710248\|g... gi\|228982153, gi... - gi\|228982153\|ref\|ZP_04142444.1\| Antiholin-like protein lrgA [Bacillus thuringiensis Bt407], gi\|22877... gi\|229153601, gi... - gi\|229153601\|ref\|ZP_04281779.1\| Antiholin-like protein lrgA [Bacillus cereus m1550], gi\|228630205\|gb... gi\|228701083, gi... - gi\|229082651\|ref\|ZP_04215114.1\| Antiholin-like protein lrgA [Bacillus cereus Rock4-2], gi\|228701083\|... gi\|229193692, gi... - gi\|229193692\|ref\|ZP_04320635.1\| Antiholin-like protein lrgA [Bacillus cereus ATCC 10876], gi\|2285898... gi\|229181688, gi... - gi\|229181688\|ref\|ZP_04309013.1\| Antiholin-like protein lrgA [Bacillus cereus 172560W], gi\|228601884\|... gi\|254687119 - gi\|254687119\|ref\|ZP_05150977.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. CNEVA-9066] LRGA_BACAA - Antiholin-like protein LrgA OS=Bacillus anthracis (strain A0248) GN=lrgA PE=3 SV=1 gi\|254735559 - gi\|254735559\|ref\|ZP_05193266.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. Western Nor... gi\|254724098 - gi\|254724098\|ref\|ZP_05185883.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. A1055] gi\|254755914 - gi\|254755914\|ref\|ZP_05207946.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. Vollum] gi\|254742176 - gi\|254742176\|ref\|ZP_05199863.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. Kruger B] gi\|167510609, gi... - gi\|167641434\|ref\|ZP_02399684.1\| putative holin [Bacillus anthracis str. A0193], gi\|167510609\|gb\|EDR8... gi\|170666856, gi... - gi\|170689213\|ref\|ZP_02880410.1\| putative holin [Bacillus anthracis str. A0465], gi\|170666856\|gb\|EDT1... gi\|254761626 - gi\|254761626\|ref\|ZP_05213646.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. Australia 9... gi\|165872520, gi... - gi\|165872520\|ref\|ZP_02217153.1\| putative holin [Bacillus anthracis str. A0488], gi\|164711743\|gb\|EDR1... gi\|167636237, gi... - gi\|167636237\|ref\|ZP_02394540.1\| putative holin [Bacillus anthracis str. A0442], gi\|167528352\|gb\|EDR9... gi\|47554801, gi\|... - gi\|47568559\|ref\|ZP_00239258.1\| LrgA family protein [Bacillus cereus G9241], gi\|47554801\|gb\|EAL13153.... gi\|30260137, gi\|... - gi\|30265459\|ref\|NP_847836.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. Ames], gi\|3026... LRGA_BACAN - Antiholin-like protein LrgA OS=Bacillus anthracis GN=lrgA PE=3 SV=1 LRGA_BACHK - Antiholin-like protein LrgA OS=Bacillus thuringiensis subsp. konkukian GN=lrgA PE=3 SV=1 gi\|190568896, gi... - gi\|190568896\|ref\|ZP_03021798.1\| putative holin [Bacillus anthracis Tsiankovskii-I], gi\|190559963\|gb\|... gi\|196036097, gi... - gi\|196036097\|ref\|ZP_03103497.1\| putative holin [Bacillus cereus W], gi\|195991264\|gb\|EDX55232.1\| puta... gi\|170708633, gi... - gi\|170708633\|ref\|ZP_02899072.1\| putative holin [Bacillus anthracis str. A0389], gi\|170126415\|gb\|EDS9... gi\|177651842, gi... - gi\|177651842\|ref\|ZP_02934425.1\| putative holin [Bacillus anthracis str. A0174], gi\|172082546\|gb\|EDT6... LRGA_BACHK - Antiholin-like protein LrgA OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=lrgA PE=3 S... LRGA_BACC2 - Antiholin-like protein LrgA OS=Bacillus cereus (strain G9842) GN=lrgA PE=3 SV=1 LRGA_BACCZ - Antiholin-like protein LrgA OS=Bacillus cereus (strain ZK / E33L) GN=lrgA PE=3 SV=1 gi\|47506171, gi\|... - gi\|47531023\|ref\|YP_022372.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. 'Ames Ancestor... gi\|206970093, gi... - gi\|206970093\|ref\|ZP_03231046.1\| putative holin [Bacillus cereus AH1134], gi\|206734670\|gb\|EDZ51839.1\|... gi\|49188278, gi\|... - gi\|49188278\|ref\|YP_031531.1\| murein hydrolase regulator LrgA [Bacillus anthracis str. Sterne], gi\|49... LRGA_BACC4 - Antiholin-like protein LrgA OS=Bacillus cereus (strain B4264) GN=lrgA PE=3 SV=1	124.0	[0..4]	[146..1]
Y2828_ERWCT - UPF0299 membrane protein ECA2828 OS=Erwinia carotovora subsp. atroseptica GN=ECA2828 PE=3 SV=1 Y2828_PECAS - UPF0299 membrane protein ECA2828 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...	123.0	[0..10]	[135..9]
gi\|77975902 - gi\|77975902\|ref\|ZP_00831436.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia frederi...	122.0	[0..10]	[124..9]
LRGA_BACWK - Antiholin-like protein LrgA OS=Bacillus weihenstephanensis (strain KBAB4) GN=lrgA PE=3 SV=1 gi\|229020664, gi... - gi\|229020664\|ref\|ZP_04177395.1\| Antiholin-like protein lrgA [Bacillus cereus AH1273], gi\|228740637\|g... gi\|228746682, gi... - gi\|229014605\|ref\|ZP_04171720.1\| Antiholin-like protein lrgA [Bacillus mycoides DSM 2048], gi\|2287466... gi\|228647196, gi... - gi\|229136258\|ref\|ZP_04265006.1\| Antiholin-like protein lrgA [Bacillus cereus BDRD-ST196], gi\|2286471... gi\|228734428, gi... - gi\|229026876\|ref\|ZP_04183201.1\| Antiholin-like protein lrgA [Bacillus cereus AH1272], gi\|228734428\|g... gi\|228607351, gi... - gi\|229176116\|ref\|ZP_04303609.1\| Antiholin-like protein lrgA [Bacillus cereus MM3], gi\|228607351\|gb\|E...	122.0	[0..4]	[146..1]
gi\|238793459, gi... - gi\|77978846\|ref\|ZP_00834270.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia interme...	121.0	[0..10]	[124..9]
gi\|94311862, gi\|... - gi\|94311862\|ref\|YP_585072.1\| LrgA [Ralstonia metallidurans CH34], gi\|93355714\|gb\|ABF09803.1\| LrgA [R...	120.0	[0..12]	[135..1]
gi\|22126533, gi\|... - gi\|22126533\|ref\|NP_669956.1\| hypothetical protein y2654 [Yersinia pestis KIM], gi\|21959534\|gb\|AAM862... gi\|45436089, gi\|... - gi\|45441229\|ref\|NP_992768.1\| hypothetical protein YP_1404 [Yersinia pestis biovar Microtus str. 9100...	120.0	[0..10]	[124..22]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMSTKKVY SFLLQAFIFS AIMLISNIIA THLPIPMPSS VIGLVILFSL LCLKVIKLEQ  60
   61 VESLGTALTG IIGFLFVPSG ISVINSLGVM GQYFVQILTV IVVATVILLA VTGLFAQFIL 120
  121 GKDEKETEDI KELKVVNKGR KHGKVA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.39794
Match:	PF03788.5
Description:	No description for PF03788.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.913	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits