YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXD_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXD_PSEAE.

Description	E-value	Query Range	Subject Range
LPXD_PSEP1 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lpxD PE...	5.0E-74	[6..353]	[4..351]
LPXD_PSEPK - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas putida (strain KT2440) GN=lpxD PE=3 SV=1	6.0E-74	[6..353]	[4..351]
LPXD_PSEAB - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lpxD PE=3...	1.0E-73	[1..353]	[1..353]
gi\|194547545, gi... - gi\|84319626\|ref\|ZP_00968020.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [...	1.0E-73	[1..353]	[1..353]
LPXD_PSEA7 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=lpxD PE=3 SV=1	9.0E-73	[1..353]	[1..353]
gi\|95112172 - gi\|95112172\|emb\|CAK16899.1\| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase [Pseudomonas en... LPXD_PSEE4 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas entomophila (strain L48) GN=lpxD PE=3 SV=1	8.0E-72	[6..353]	[4..351]
LPXD_PSEU2 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lpx...	4.0E-71	[4..353]	[2..351]
gi\|120555449, gi... - gi\|77952645\|ref\|ZP_00817059.1\| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD [Mar...	5.0E-70	[2..341]	[1..340]
LPXD_CHRSD - UDP-3-O-acylglucosamine N-acyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA...	8.0E-70	[1..338]	[1..341]
LPXD_PSESM - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=lpxD... LPXD_PSESM - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase OS=Pseudomonas syringae pv. tomato GN=lpx... gi\|213969128, gi... - gi\|213969128\|ref\|ZP_03397267.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Pseudomo...	1.0E-69	[4..353]	[2..351]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSTLSYTLG QLAAHVGAEV RGDADLPIQG LATLQEAGPA QLSFLANPQY RKYLPESRAG  60
   61 AVLLTAADAD GFAGTALVVA NPYLAYASLS HLFDRKPKAA AGIHPTAIVA ADAEVDPSAS 120
  121 VGAYAVIESG ARIGAGVSIG AHCVIGARSV IGEGGWLAPR VTLYHDVTIG ARVSIQSGAV 180
  181 IGGEGFGFAN EKGVWQKIAQ IGGVTIGDDV EIGANTTIDR GALSDTLIGN GVKLDNQIMI 240
  241 AHNVQIGDHT AMAACVGISG SAKIGRHCML AGGVGLVGHI EICDNVFVTG MTMVTRSITE 300
  301 PGSYSSGTAM QPAAEWKKSA ARIRQLDDMA RRLQQLEKRL AAVTSSGDAS SDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	2iu8A
Description:	No description for 2iu8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits