YRC Public Data Repository - Protein Structure Prediction

Protein:	PLPP1_MOUSE
Organism:	Mus musculus
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLPP1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|27542785 - gi\|27542785\|gb\|AAO16875.1\| PAP2A-GFP fusion protein [synthetic construct]	301.0	[0..1]	[283..1]
gi\|45592928, gi\|... - gi\|45592928\|ref\|NP_032273.1\| phosphatidic acid phosphatase type 2A isoform 1 [Mus musculus], gi\|3817... gi\|117616480 - gi\|117616480\|gb\|ABK42258.1\| PA-phosphatase [synthetic construct]	269.0	[0..1]	[283..1]
gi\|122692411, gi... - gi\|81674095\|gb\|AAI09902.1\| Phosphatidic acid phosphatase type 2A [Bos taurus], gi\|122692411\|ref\|NP_0...	269.0	[0..1]	[283..1]
PPAP2A - phosphatidic acid phosphatase type 2A	266.0	[0..1]	[283..1]
gi\|114600248 - gi\|114600248\|ref\|XP_517759.2\| PREDICTED: phosphatidic acid phosphatase type 2A isoform 3 [Pan troglo...	266.0	[0..1]	[283..1]
PLPP1_CAVPO - Phospholipid phosphatase 1 OS=Cavia porcellus GN=PLPP1 PE=2 SV=1	265.0	[0..1]	[283..1]
gi\|61889081, gi\|... - gi\|61889081\|ref\|NP_071983.2\| phosphatidic acid phosphatase type 2A [Rattus norvegicus], gi\|38197674\|...	263.0	[0..1]	[283..1]

Back

Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVICVLLA GLPFAILTSR HTPFQRGIFC NDDSIKYPYK EDTIPYALLG  60
   61 GIVIPFCIIV MSIGESLSVY FNVLHSNS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVGNPYIATI YKAVGAFLFG VSASQSLTDI AKYTIGSLRP HFLAICNPDW SKINCSDGYI  60
   61 EDYICQGNEE KVKEGRLSFY SGHSSFSMYC MLFVALYLQA RMKGDWARLL RPMLQFGLIA 120
  121 FSIYVGLSRV SDYKHHWSDV TVGLIQGAAM AILVALYVSD FFKDTHSYKE RKEEDPHTTL 180
  181 HETASSRNYS TNHEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	2akcA
Description:	No description for 2akcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits