YRC Public Data Repository - Protein Structure Prediction

Protein:	LIVH_ECOLI
Organism:	Escherichia coli
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIVH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|106881932, gi... - gi\|119946608\|ref\|YP_944288.1\| ABC transporter inner-membrane translocator [Psychromonas ingrahamii 3...	211.0	[0..4]	[305..251]
gi\|25520371 - pir\|\|E97649 probable permease of ABC transporter (PA4859) [imported] - Agrobacterium tumefaciens (st... gi\|15157590, gi\|... - gi\|15889684\|ref\|NP_355365.1\| hypothetical protein AGR_C_4379 [Agrobacterium tumefaciens str. C58], g...	209.0	[0..25]	[305..337]
gi\|90414544, gi\|... - gi\|90414544\|ref\|ZP_01222518.1\| putative urea short-chain amide or branched-chain amino acid uptake A...	206.0	[0..8]	[305..250]
gi\|76583467, gi\|... - gi\|76818994\|ref\|YP_336949.1\| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710...	205.0	[0..2]	[294..551]
gi\|114707991, gi... - gi\|114707991\|ref\|ZP_01440882.1\| putative ureashort-chain amide or branched-chain amino acid uptake A...	204.0	[0..25]	[305..289]
gi\|196111480, gi... - gi\|88793947\|ref\|ZP_01109659.1\| Branched-chain amino acid ABC-type transport system, permease compone...	202.0	[0..8]	[305..246]
gi\|84387635, gi\|... - gi\|84387635\|ref\|ZP_00990652.1\| putative ureashort-chain amide or branched-chain amino acid uptake AB...	202.0	[0..9]	[305..247]
gi\|94426200, gi\|... - gi\|94501624\|ref\|ZP_01308140.1\| Branched-chain amino acid ABC-type transport system, permease compone...	200.0	[0..27]	[305..267]
gi\|86164365, gi\|... - gi\|87120262\|ref\|ZP_01076157.1\| putative ureashort-chain amide or branched-chain amino acid uptake AB...	199.0	[0..2]	[305..260]
gi\|25502852 - pir\|\|D96031 hypothetical protein SMb20604 [imported] - Sinorhizobium meliloti (strain 1021) magaplas... gi\|15141404, gi\|... - gi\|16265264\|ref\|NP_438056.1\| short-chain amide/branched-chain amino acid uptake ABC transporter perm...	198.0	[0..25]	[305..258]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQFLYFLQ QMFNGVTLGS TYALIAIGYT MVYGIIGMIN FAHGEVYMIG SYVSFMIIAA  60
   61 LMMMGIDTGW LLVAAGFVGA IVIASAYGWS IERVAYRPVR NSKRLIALIS AIGMSIFLQN 120
  121 YVSLTEGSRD VALPSLFNGQ WVVGHSENFS ASITTMQAVI WIVTFLAMLA LTIFIRYSRM 180
  181 GRACRACAED LKMASLLGIN TDRVIALTFV IGAAMAAVAG VLLGQFYG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [229-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VINPYIGFMA GMKAFTAAVL GGIGSIPGAM IGGLILGIAE ALSSAYLSTE YKDVVSFALL  60
   61 ILVLLVMPTG ILGRPEVEKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits