YRC Public Data Repository - Protein Structure Prediction

Protein:	LGT_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGT_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|254237423, gi... - gi\|84318476\|ref\|ZP_00966899.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Pseudomonas aerugi...	4.0E-87	[1..266]	[1..266]
gi\|49089376 - gi\|49089376\|gb\|AAT51676.1\| PA0341 [synthetic construct]	5.0E-87	[1..266]	[1..266]
LGT_PSEAB - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lgt PE=3 ...	6.0E-87	[1..266]	[1..266]
LGT_PSEA7 - Prolipoprotein diacylglyceryl transferase OS=Pseudomonas aeruginosa (strain PA7) GN=lgt PE=3 SV=1	7.0E-87	[1..266]	[1..266]
LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221... LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus GN=lgt PE=3 SV=1	5.0E-84	[2..265]	[6..268]
gi\|67547059, gi\|... - gi\|67547059\|ref\|ZP_00424966.1\| Prolipoprotein diacylglyceryl transferase [Burkholderia vietnamiensis...	2.0E-83	[1..265]	[158..453]
LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus GN=lgt PE=3 SV=2 LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain CMCP6) GN=lgt PE=3 SV=2	4.0E-83	[2..264]	[6..267]
LGT_VIBVY - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain YJ016) GN=lgt PE=3 SV=1	8.0E-83	[2..264]	[6..267]
LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) ... LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea GN=lgt PE=3 SV=1	1.0E-82	[1..266]	[1..267]
gi\|116183388, gi... - gi\|75853859\|ref\|ZP_00761609.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio sp. Ex25], ... gi\|91188458, gi\|... - gi\|91227679\|ref\|ZP_01261956.1\| prolipoprotein diacylglyceryl transferase [Vibrio alginolyticus 12G01...	1.0E-82	[2..263]	[6..266]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTYPQIDPV ALAIGPLKIH WYGLMYLIGI GGAWLLASRR MKRFDPTWTK ERLSDLVFWV  60
   61 ACGVILGGRL GYVLFYNLDE YIANPTLIFE VWKGGMSFHG GLLGVMLAVW WFGKRHGKSF 120
  121 FQLMDFIAPL VPIGLGAGRI GNFINSELWG KVSDVPWAMV FPNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLPRHPSQL YQFALEGVAL FVILWLFTRK PRPTASVSGL FVLCYGIFRF VVEFVRVPDA  60
   61 QLGYLAWGWL TMGQVLCVPM VLAGIALMVW AYRRDAAQPK AA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.954	0.046	lipoprotein biosynthetic process	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits