YRC Public Data Repository - Protein Structure Prediction

Protein:	LGT_GEOSL
Organism:	Geobacter sulfurreducens
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LGT_GEOSL.

Description	E-value	Query Range	Subject Range
LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221... LGT_VIBPA - Prolipoprotein diacylglyceryl transferase OS=Vibrio parahaemolyticus GN=lgt PE=3 SV=1	311.0	[0..1]	[257..6]
gi\|67547059, gi\|... - gi\|67547059\|ref\|ZP_00424966.1\| Prolipoprotein diacylglyceryl transferase [Burkholderia vietnamiensis...	308.0	[0..1]	[257..159]
gi\|116183388, gi... - gi\|75853859\|ref\|ZP_00761609.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio sp. Ex25], ... gi\|91188458, gi\|... - gi\|91227679\|ref\|ZP_01261956.1\| prolipoprotein diacylglyceryl transferase [Vibrio alginolyticus 12G01...	308.0	[0..1]	[257..6]
gi\|84375415, gi\|... - gi\|84393971\|ref\|ZP_00992711.1\| prolipoprotein diacylglyceryl transferase [Vibrio splendidus 12B01], ... gi\|86147415, gi\|... - gi\|86147415\|ref\|ZP_01065728.1\| prolipoprotein diacylglyceryl transferase [Vibrio sp. MED222], gi\|858...	308.0	[0..1]	[257..6]
LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus GN=lgt PE=3 SV=2 LGT_VIBVU - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain CMCP6) GN=lgt PE=3 SV=2	306.0	[0..1]	[257..6]
LGT_VIBVY - Prolipoprotein diacylglyceryl transferase OS=Vibrio vulnificus (strain YJ016) GN=lgt PE=3 SV=1	306.0	[0..1]	[257..6]
LGT_VIBF1 - Prolipoprotein diacylglyceryl transferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=lgt PE=...	304.0	[0..1]	[256..6]
gi\|121546811, gi... - gi\|121591330\|ref\|ZP_01678619.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 2740-80],... gi\|229530479, gi... - gi\|229530479\|ref\|ZP_04419867.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 12129(1)]... gi\|124114027, gi... - gi\|153216962\|ref\|ZP_01950726.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 1587], gi... gi\|229608725, gi... - gi\|229608725\|ref\|YP_002879373.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MJ-1236]... gi\|153803568, gi... - gi\|153803568\|ref\|ZP_01958154.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MZO-3], g... gi\|153820131, gi... - gi\|153820131\|ref\|ZP_01972798.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae NCTC 8457... gi\|229354244, gi... - gi\|229508720\|ref\|ZP_04398213.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae B33], gi\|... LGT_VIBCH - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor... gi\|116187791, gi... - gi\|75828824\|ref\|ZP_00758161.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae MO... LGT_VIBC3 - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classi... gi\|121730085, gi... - gi\|75814358\|ref\|ZP_00744958.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae V5... LGT_VIBCH - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae GN=lgt PE=3 SV=1 gi\|197750775, gi... - gi\|254291914\|ref\|ZP_04962696.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae AM-19226]... LGT_VIBCM - Prolipoprotein diacylglyceryl transferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lgt PE=3 ... gi\|148875364, gi... - gi\|153829175\|ref\|ZP_01981842.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae 623-39], ... gi\|229505706, gi... - gi\|229505706\|ref\|ZP_04395216.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae BX 330286... gi\|153826522, gi... - gi\|153826522\|ref\|ZP_01979189.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae MZO-2], g... gi\|229350183, gi... - gi\|229512934\|ref\|ZP_04402401.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae TMA 21], ... gi\|229519530, gi... - gi\|229519530\|ref\|ZP_04408973.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae RC9], gi\|... gi\|229342197, gi... - gi\|229520964\|ref\|ZP_04410386.1\| prolipoprotein diacylglyceryl transferase [Vibrio cholerae TM 11079-...	301.0	[0..1]	[257..6]
LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) ... LGT_NITEU - Prolipoprotein diacylglyceryl transferase OS=Nitrosomonas europaea GN=lgt PE=3 SV=1	300.0	[0..1]	[255..2]
gi\|254226522, gi... - gi\|75818000\|ref\|ZP_00748236.1\| COG0682: Prolipoprotein diacylglyceryltransferase [Vibrio cholerae V5...	299.0	[0..1]	[257..6]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFPHIDPVF FRLGHLEFRW YGLMYILGFI AAYFIVRRAA GRRGLALTQD DVADVIFSLA  60
   61 IGVILGGRLG YILFYNLSYY LSHPLKLFAV WEGGMSFHGG LLGVILAGVY VARQKKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPVLADICA PAAPVGLGLG RLGNFINGEL YGRVTDVPWG IIFPGGGGVP RHPSQLYEAV  60
   61 LEGPVLFLIL MAVGRRERPA GVVFWTFIAF YGLFRFLVEF FREPDAQLGL LAGPFSMGQL 120
  121 LSFPMFLLGL TMAVLVSRRK VGP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.954	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.950	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.926	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.868	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.857	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.848	N/A	N/A	a.24.26	Description not found.
View	Download	0.826	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.803	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.758	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.717	N/A	N/A	f.25.1	Cytochrome c oxidase subunit III-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits