YRC Public Data Repository - Protein Structure Prediction

Protein:	LEUD_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEUD_PSEAE.

Description	E-value	Query Range	Subject Range
LEUD_PSEU2 - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas syringae pv. syringae (strain B728a) GN=l...	1.0E-74	[1..212]	[1..212]
LEUD_PSEPK - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas putida (strain KT2440) GN=leuD PE=3 SV=1	8.0E-74	[1..212]	[1..212]
LEUD_PSE14 - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A...	8.0E-74	[1..212]	[1..212]
gi\|58580560, gi\|... - gi\|58580560\|ref\|YP_199576.1\| isopropylmalate isomerase small subunit [Xanthomonas oryzae pv. oryzae ...	9.0E-74	[1..211]	[41..251]
LEUD_RALSO - 3-isopropylmalate dehydratase small subunit OS=Ralstonia solanacearum (strain GMI1000) GN=leuD PE=3 ... LEUD_RALSO - 3-isopropylmalate dehydratase small subunit OS=Ralstonia solanacearum GN=leuD PE=3 SV=1	1.0E-73	[1..210]	[1..210]
gi\|148513037, gi... - gi\|82739315\|ref\|ZP_00902122.1\| 3-isopropylmalate dehydratase small subunit region [Pseudomonas putid...	1.0E-73	[1..212]	[1..212]
gi\|240128364 - gi\|240128364\|ref\|ZP_04741025.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae SK-93... gi\|239999084 - gi\|239999084\|ref\|ZP_04719008.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae 35/02... gi\|240014009 - gi\|240014009\|ref\|ZP_04720922.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae DGI18... gi\|240113062 - gi\|240113062\|ref\|ZP_04727552.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae MS11] gi\|240115817 - gi\|240115817\|ref\|ZP_04729879.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID18... gi\|240016450 - gi\|240016450\|ref\|ZP_04722990.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae FA614... gi\|240080569 - gi\|240080569\|ref\|ZP_04725112.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae FA19] gi\|240123665 - gi\|240123665\|ref\|ZP_04736621.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID33... gi\|240125855 - gi\|240125855\|ref\|ZP_04738741.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae SK-92... gi\|240118115 - gi\|240118115\|ref\|ZP_04732177.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID1] LEUD_NEIG1 - 3-isopropylmalate dehydratase small subunit OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) ... gi\|240121575 - gi\|240121575\|ref\|ZP_04734537.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID24...	2.0E-73	[1..211]	[1..211]
gi\|28971658 - gi\|28971658\|dbj\|BAC65258.1\| 3-isopropylmalate dehydratase small subunit [Burkholderia multivorans] LEUD_BURM1 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN...	5.0E-73	[1..210]	[1..210]
gi\|11269414 - pir\|\|C81836 probable 3-isopropylmalate dehydratase (EC 4.2.1.33) small chain NMA1452 [imported] - Ne... LEUD_NEIMA - 3-isopropylmalate dehydratase small subunit OS=Neisseria meningitidis serogroup A GN=leuD PE=3 SV=1 LEUD_NEIMA - 3-isopropylmalate dehydratase small subunit OS=Neisseria meningitidis serogroup A / serotype 4A (str...	5.0E-73	[1..211]	[1..211]
LEUD_XANOR - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae GN=leuD PE=3 SV=2 LEUD_XANOM - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN... LEUD_XANOR - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO... LEUD_XANOP - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=leuD...	6.0E-73	[1..211]	[1..211]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPYTQTTGL VAPLDRANVD TDQIIPKQFL KSIKRTGFGP NLFDEWRYLD VGQPGQDNSK  60
   61 RPLNPDFVLN QPRYQGASVL LARENFGCGS SREHAPWALD EYGFRTVIAP SYADIFFNNS 120
  121 FKNGLLPIIL PEAEVDELFR QVEANEGYQL SIDLAAQTVT RPDGKVLGFE VDPFRKHCLL 180
  181 NGLDDIGLTL QDADAIRAFE DGYRQQQPWL FR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2hcuA
Description:	No description for 2hcuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits