YRC Public Data Repository - Protein Structure Prediction

Protein:	LALBA_SHEEP
Organism:	Ovis aries
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LALBA_SHEEP.

Description	E-value	Query Range	Subject Range
gi\|295774, gi\|75... - gi\|7542833\|gb\|AAF63624.1\|AF249896_1 alpha lactalbumin [Bos taurus], gi\|295774\|emb\|CAA29664.1\| alpha-...	205.0	[0..1]	[142..1]
LALBA_CAPHI - Alpha-lactalbumin OS=Capra hircus GN=LALBA PE=1 SV=1	203.0	[0..1]	[142..1]
LALBA_BOSMU - Alpha-lactalbumin OS=Bos mutus grunniens GN=LALBA PE=2 SV=1	202.0	[0..1]	[142..1]
gi\|57526478, gi\|... - pir\|\|S01178 alpha-lactalbumin precursor - sheep, gi\|57526478\|ref\|NP_001009797.1\| lactalbumin, alpha...	202.0	[0..1]	[142..1]
gi\|167782078 - gi\|167782078\|gb\|ACA00156.1\| alpha-lactalbumin [Bos indicus] LCA_BUBBU, LALBA... - (Q9TSN6) Alpha-lactalbumin precursor (Lactose synthase B protein), Alpha-lactalbumin OS=Bubalus buba...	201.0	[0..1]	[142..1]
LALBA_CANLF - Alpha-lactalbumin OS=Canis lupus familiaris GN=LALBA PE=2 SV=1	198.0	[0..1]	[142..1]
gi\|109096369 - gi\|109096369\|ref\|XP_001102116.1\| PREDICTED: lactalbumin, alpha- [Macaca mulatta]	197.0	[0..1]	[142..1]
gi\|60832429 - gi\|60832429\|gb\|AAX37010.1\| lactalbumin alpha [synthetic construct]	194.0	[0..1]	[142..1]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFVSLLLV GILFHATQAE QLTKCEVFQE LKDLKDYGGV SLPEWVCTAF HTSGYDTQAI  60
   61 VQNNDSTEYG LFQINNKIWC KDDQNPHSRN ICNISCDKFL DDDLTDDIMC VKKILDKVGI 120
  121 NYWLAHKALC SEKLDQWLCE KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1hmlA
Description:	ALPHA_LACTALBUMIN POSSESSES A DISTINCT ZINC BINDING SITE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits